Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq2718 223 3e-53 >seq2718 Length=1670031 Score = 223 bits (246), Expect = 3e-53 Identities = 478/710 (67%), Gaps = 6/710 (1%) Strand=Plus/Minus Query 14018 CCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAA 14077 ||||| || | || || | ||| || | || || ||||| | ||||||| | ||| Sbjct 71508 CCTAGCTCGACAAGCAAACGATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAA 71449 Query 14078 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 14137 |||||||| ||||| || || || | | ||||| ||||| | || || ||| Sbjct 71448 TTCATACCGATTAGATTCACCGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACA 71389 Query 14138 GCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAA 14197 || || || || |||| |||||| || | | ||| ||||| || Sbjct 71388 GCTTCAGAAATTATTTCAACAATACGCTCATTACTTGGTTTTTGTATTAAATGTTGGAAC 71329 Query 14198 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 14257 || ||||| || || ||||||||||| |||||||||| ||| ||||| || |||||| Sbjct 71328 ATCAAACATGCGAAGTCACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAAT 71269 Query 14258 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAA 14317 || || |||||||| || || ||||| || | ||| || || | ||| || || Sbjct 71268 GTCAAGCCTGGCATTAAACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTG 71209 Query 14318 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTG 14377 ||||| || || ||||| |||||||| || |||| ||||| ||||| || || Sbjct 71208 AAGAAAATACCTTCAACGGCAGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTTC 71149 Query 14378 TTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATA 14437 || ||||| ||||| || | || || | | |||||| || ||| Sbjct 71148 GAAGAAATCCAAGCAAGCGCCCAATCTGCCTTACGCTTTACGGCAGGCATTGTCTCTATA 71089 Query 14438 GCATTAAATAAATG-TTCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAG 14494 ||||| ||||| |||||| | ||| ||| ||| ||| ||||||||||| | || | Sbjct 71088 GCATTGAATAAGCAATTCCTT-TGTTTCGAGTCCTT--AATATATGTATCAATTAATATG 71032 Query 14495 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCT 14554 |||||||||||||| || | || ||||| || || ||||| ||||| || || | || Sbjct 71031 CTATACATTTCAGAATGCACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCC 70972 Query 14555 TCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14614 |||| | ||| || || | | || | ||| | | ||||||||| || ||||||||| Sbjct 70971 TCTGTCACTTGGACTTCCTGGCAGAAGCGTTCAACTACATTTTCATTCACAATACCATCA 70912 Query 14615 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTT 14674 || || ||||| || || | || |||||| | | | || | || |||| | Sbjct 70911 GATGCGGCGAAAAAGGCTAACACGTGGGAAATAAAATGTCGTTCATTATCAGTGAGGCGT 70852 Query 14675 TTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14724 |||||| | | ||| ||||||||||||||||| || |||||||| || Sbjct 70851 GCCCAATCATCCATATCTTTAGAAAGATCTACTTCCTCTACTGTCCAGAA 70802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482325667068080