Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq2605 114 1e-20
seq1558 98.7 8e-16
seq603 93.3 3e-14
>seq2605
Length=276952
Score = 114 bits (126), Expect = 1e-20
Identities = 165/232 (71%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172
|||||| | || | ||| || ||||| ||||| || ||||| |||| ||| || |||
Sbjct 242109 AAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATC 242050
Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232
||||||||| || || ||| | || || | |||||||| ||| | |||||||||||
Sbjct 242049 TTCCAATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGGGGAATTCCTTCCTTATC 241990
Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292
||||| ||| || ||| ||| ||| || ||||| |||| |||||| |
Sbjct 241989 TTGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGCTCAACCTCAAGAGTGATGGT 241930
Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAAC--TCTTATAAA 18342
|| || || | |||||||| |||||||||||| | ||| ||||| |||
Sbjct 241929 CTTACCCGTAAGGGTTTTTACGAAAATTTGCATTGCTGAACAATCTTACAAA 241878
>seq1558
Length=2163639
Score = 98.7 bits (108), Expect = 8e-16
Identities = 153/216 (71%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| || || ||||| || ||||| ||||||||||||| || || || ||||
Sbjct 2034159 AGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCT 2034100
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||||||| || || || |||| | | |||||||| ||| | ||| || |||||
Sbjct 2034099 TCCAATTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGGATGCCCTCTTTATCT 2034040
Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292
|||| | || ||||| | | | | |||||| |||||| || | ||| ||| |
Sbjct 2034039 TGGATTT-TAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTAATGGT 2033981
Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328
|| || || || ||||| || ||||| ||||||||
Sbjct 2033980 CTTACCAGTTAAGGTTTTGACGAAAATCTGCATTTT 2033945
>seq603
Length=780983
Score = 93.3 bits (102), Expect = 3e-14
Identities = 136/190 (72%), Gaps = 2/190 (1%)
Strand=Plus/Minus
Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172
||| || | ||| || |||||||| || |||||||||||||||| || || | |||
Sbjct 747537 AAGGACTAAGTGGAGGGTTGATTCCTTCTGAATGTTGTAGTCGGACAAGGTACGTCCATC 747478
Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232
|||||||| ||||| ||| | || | | ||||||||| || | |||||||||||
Sbjct 747477 CTCCAATTGCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCCTTATC 747418
Query 18233 GGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291
|||| | || ||||| | ||| |||||| ||||| ||| | |||||||
Sbjct 747417 TTGGATTT-TGGCTTTGACATTCTCAATGGTGTCAGATGGCTCAACTTCCAAGGTGATGG 747359
Query 18292 TTTTGCCGGT 18301
||||||| ||
Sbjct 747358 TTTTGCCAGT 747349
Score = 89.7 bits (98), Expect = 4e-13
Identities = 160/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| || ||||| | ||| |||| |||||||| || || || || |||||||| |||| |
Sbjct 745796 CCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGAC 745737
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || | ||||||| |||||| || ||| |||| | | ||||||||| |||
Sbjct 745736 AGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGG 745677
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACC-TGTGCAACAGTGTCACCGGGCTCGGT 18277
| ||||| || || ||| | | |||| | | | | ||| ||| || || ||
Sbjct 745676 ATTCCTTCTTTGTCTTGAATCT-TAGCTTTAACATTTTCAATAGTATCGGATGGTTCAAC 745618
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328
|| | |||||| | ||||| ||||| || || || || |||||||||||
Sbjct 745617 CTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 745567
Score = 86.0 bits (94), Expect = 5e-12
Identities = 143/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182
|| || || ||||| || ||||| || ||||||| || ||| | ||| ||||| |||
Sbjct 746000 TGTAGAGTGGATTCCTTCTGAATATTATAGTCGGACAGTGTGCGTCCATCCTCCAACTGT 745941
Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242
||||| || | || | | ||||||||| ||| | ||||||||||| ||||| |
Sbjct 745940 TTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGAATTT-T 745882
Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301
|| ||||| | ||| || || ||||| || | |||||| |||| || ||
Sbjct 745881 AGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTTCCCGT 745822
Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325
||| ||||| || ||||| |||||
Sbjct 745821 CAAAGTTTTGACGAAAATCTGCAT 745798
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379328715518970
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |