Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq2605 114 1e-20 seq1558 98.7 8e-16 seq603 93.3 3e-14 >seq2605 Length=276952 Score = 114 bits (126), Expect = 1e-20 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 |||||| | || | ||| || ||||| ||||| || ||||| |||| ||| || ||| Sbjct 242109 AAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATC 242050 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||||||| || || ||| | || || | |||||||| ||| | ||||||||||| Sbjct 242049 TTCCAATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGGGGAATTCCTTCCTTATC 241990 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||||| ||| || ||| ||| ||| || ||||| |||| |||||| | Sbjct 241989 TTGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGCTCAACCTCAAGAGTGATGGT 241930 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAAC--TCTTATAAA 18342 || || || | |||||||| |||||||||||| | ||| ||||| ||| Sbjct 241929 CTTACCCGTAAGGGTTTTTACGAAAATTTGCATTGCTGAACAATCTTACAAA 241878 >seq1558 Length=2163639 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| || || ||||| || ||||| ||||||||||||| || || || |||| Sbjct 2034159 AGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCT 2034100 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||||||| || || || |||| | | |||||||| ||| | ||| || ||||| Sbjct 2034099 TCCAATTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGGATGCCCTCTTTATCT 2034040 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 |||| | || ||||| | | | | |||||| |||||| || | ||| ||| | Sbjct 2034039 TGGATTT-TAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTAATGGT 2033981 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 || || || || ||||| || ||||| |||||||| Sbjct 2033980 CTTACCAGTTAAGGTTTTGACGAAAATCTGCATTTT 2033945 >seq603 Length=780983 Score = 93.3 bits (102), Expect = 3e-14 Identities = 136/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| || | ||| || |||||||| || |||||||||||||||| || || | ||| Sbjct 747537 AAGGACTAAGTGGAGGGTTGATTCCTTCTGAATGTTGTAGTCGGACAAGGTACGTCCATC 747478 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 |||||||| ||||| ||| | || | | ||||||||| || | ||||||||||| Sbjct 747477 CTCCAATTGCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCCTTATC 747418 Query 18233 GGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291 |||| | || ||||| | ||| |||||| ||||| ||| | ||||||| Sbjct 747417 TTGGATTT-TGGCTTTGACATTCTCAATGGTGTCAGATGGCTCAACTTCCAAGGTGATGG 747359 Query 18292 TTTTGCCGGT 18301 ||||||| || Sbjct 747358 TTTTGCCAGT 747349 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || ||||| | ||| |||| |||||||| || || || || |||||||| |||| | Sbjct 745796 CCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGAC 745737 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||||||| |||||| || ||| |||| | | ||||||||| ||| Sbjct 745736 AGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGG 745677 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACC-TGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || ||| | | |||| | | | | ||| ||| || || || Sbjct 745676 ATTCCTTCTTTGTCTTGAATCT-TAGCTTTAACATTTTCAATAGTATCGGATGGTTCAAC 745618 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 || | |||||| | ||||| ||||| || || || || ||||||||||| Sbjct 745617 CTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 745567 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || ||||| || ||||| || ||||||| || ||| | ||| ||||| ||| Sbjct 746000 TGTAGAGTGGATTCCTTCTGAATATTATAGTCGGACAGTGTGCGTCCATCCTCCAACTGT 745941 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| || | || | | ||||||||| ||| | ||||||||||| ||||| | Sbjct 745940 TTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGAATTT-T 745882 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || ||||| | ||| || || ||||| || | |||||| |||| || || Sbjct 745881 AGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTTCCCGT 745822 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 ||| ||||| || ||||| ||||| Sbjct 745821 CAAAGTTTTGACGAAAATCTGCAT 745798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379328715518970