Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3107 499 3e-136 seq2718 237 1e-57 seq603 109 5e-19 seq2605 89.7 5e-13 >seq3107 Length=1323484 Score = 499 bits (552), Expect = 3e-136 Identities = 1294/1956 (66%), Gaps = 57/1956 (3%) Strand=Plus/Plus Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165 || ||||| ||||| ||||| || ||||| || ||||| || || | ||||||||||||| Sbjct 934418 TTATCCACAGTAAATTGTATAGCATTTGCAGCTGGTTTCGTACGCAAATAATACATGCCC 934477 Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGC 22225 ||||| ||||| |||||| || | |||||||| || || | || ||||| | ||| Sbjct 934478 GTCTTGAGACCTGCCTTCCAGCCGAAGAAATGTATAGAAGTAAGCTTACCATAGTTGGGC 934537 Query 22226 AAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCC 22285 ||| || | |||||||||||||| |||||||| || || || ||||| || ||| Sbjct 934538 TCAGCCACGTGTATGTTGAACGACTGACTTTGATCGATGAATGCACCGCGATCTGCAGCC 934597 Query 22286 ATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCT 22345 || || || |||| || || || ||||| || || ||||| || | | || | Sbjct 934598 ATTTTGATTGATGTTTTCACGGAAATCTCCCAAACAGTTTTGTATAGATCGCGTATGTGC 934657 Query 22346 AACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATC 22405 ||||| ||||| || | || | ||| ||| | || ||| || ||| || || Sbjct 934658 TGTGGTATGGATTCAATATTTTGTATGGAGCCGCGACTGGTTATAATATTATTCTTCATA 934717 Query 22406 GTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGA 22465 ||| | ||||||||| | |||| | ||| | || ||| | || || |||||| Sbjct 934718 TCATCATCCCACAAACCCAACTCGGTTAGATCGCGCAACAAGTGATGATTTACAACTTGA 934777 Query 22466 AACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCA 22525 || || || || | || || ||| ||||| ||||| ||| | ||||| || || ||| Sbjct 934778 AATTCACCTGAAAGCACACGACGTGTATAAATATTGGAAGTGTATGGTTCAAATGACTCA 934837 Query 22526 TTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTT 22585 ||||| |||| || || || || ||||| || ||||| ||||| | ||||| ||||| Sbjct 934838 TTGTTGCCCATAATTTGTGCTGTTGAAGCAGTTGGCATGGGCGCAAGCAGTAAAGAGTTG 934897 Query 22586 CTCAAGCC---GTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGAC 22642 | | || |||||| ||||| ||| | | ||| | ||| ||||| | Sbjct 934898 CGGACACCATGTTGCTTT---ATTTTCTCCTTCAATTCGGTCCAATTCCAAAGATCAGTT 934954 Query 22643 GGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCG 22702 || || || |||||||| || || || | | || ||| | || |||||| Sbjct 934955 GGTGT---TTTATCCCACATGTCATACTGTAGAATACCCTTACTAACGGGTGAACCTTCG 935011 Query 22703 TACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAA 22762 || ||||| || || ||| | | |||| | |||||| || || ||||| ||||| || Sbjct 935012 TAAGTTTCATAGGGGCCAAGTTTTTCGGCTAATTCGCAACTAGCTTCCAAGGCGCCATAG 935071 Query 22763 TATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCATA 22822 || || || ||||| |||| || ||||| || | | |||||||| || | Sbjct 935072 TAAATTGTTTCGAATATTTGCTGATTCAAAAGTAATGCTTCTTCACTTTCGTATGGATAA 935131 Query 22823 CGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTC 22882 ||||| | | || ||||| || | |||||| || || |||||||| || || | | | Sbjct 935132 CGCATTAAAATTAAAGCGTCAGCAAAACCCTGTACTCCAATACCGATGGGACGATGTCTG 935191 Query 22883 AGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAG 22942 | |||||| ||||||| || || ||||| ||| || ||| || | ||||| Sbjct 935192 AAATTCGATTTCCTTGCCTCCGGTAAGGGATAATGATTAATGTCTATTATTTTATTCAAA 935251 Query 22943 TTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACG----CCCGA 22998 || | || || |||| || | | |||||||| ||| || Sbjct 935252 TTACGTGTAACGGTTTTGGTGACCTCTTTGAGGCGCTTAAAGTCGT--ACGTTTTTTCGG 935309 Query 22999 TTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTT 23058 ||| |||||| | || | ||||| || || | ||||| || || ||||| || Sbjct 935310 GTGT--GACAAACATATTCAACGCGATTGAAGCCAAGTTGCACACAGCTACCTCATCAGG 935367 Query 23059 GGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCT 23118 | | || || |||||||||||||||| ||| |||||||| || || || | ||| Sbjct 935368 TGCTGAATATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTACCAACATTCTG 935427 Query 23119 CTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGAC 23178 || || || |||||||| || | ||| || || | |||||| || ||||| ||||| || Sbjct 935428 TTGATTACTCTTTCGATTACAAGCATCTTTATACAACATGTATGGTGTGCCGGTCTCCAC 935487 Query 23179 CTGCGACTCGATGATCGCT-CGCCACATAGTCTGAGCGTGAAC-----ACGTCGCACGTA 23232 ||||| || || || ||| ||| | | | || || | || | |||||| Sbjct 935488 TTGCGATTCAATAAT-GCTAAACCAAAGACTTTGTGCTTTTACTTTCTTATTAGCACGT- 935545 Query 23233 CCTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGC 23292 ||||| | || || || | || || || || || |||| | || Sbjct 935546 ----CCTTCCTGTTCATATTTCAGATATAATTTTTCGAACTCTTCACCCCATACTTCATG 935601 Query 23293 CAGGCCGGG-CGATTGCATCGGACACATGAGACTCCACATTGAGTCATT---TTCAACGC 23348 || ||||| | ||| | |||||||| || ||| | ||||| ||| || | Sbjct 935602 TAGACCGGGACACTTGTGT-GGACACATTAGCGACCAGTCT---TCATTGGCTTCTACAC 935657 Query 23349 GTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCT 23408 || ||||||| ||||| |||||||| | ||| || |||| || | |||||| ||| | Sbjct 935658 GTTTCATAAATAGATCAGGTATCCACAAAGCATAAAACAAATCTCTGGCGCGATGCTCTT 935717 Query 23409 CTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGA 23468 |||| || ||||| || |||||||||||||| | || | || |||||||| || || | Sbjct 935718 CTTTCCCAGTGTTTTTCTTCAAATCCAAAAATTGGAAAATATCAGCATGCCATGGTTCCA 935777 Query 23469 GGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGT 23528 |||| | |||||| ||||| || | ||| ||| || ||||| || || || || | Sbjct 935778 GGTAGATGGCAAATGCGCCTGGACGTTTACCGCCACCTTGATCCACATAGCGTGCTACAT 935837 Query 23529 TGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACAC 23588 | ||| |||||| | ||| ||||| | |||||| || | ||| | ||||| | Sbjct 935838 TATTGAACACTCGCAACATAGGCACCAAACCGTTTGATGTGCCATTTGTACCCGCAATTG 935897 Query 23589 TCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATA 23648 | |||||||| || | | || |||| | ||| || || || | ||||| || | Sbjct 935898 CAGTGCCTTTTGCACGTATGCAATGTACGTTCAGACCAATACCCCCAGCAGATTTGGAAA 935957 Query 23649 TCATCGCGCATTG--TTTCAGAGTGTCGTAGATGCCCTCGATG---CTGTCCTCTTTGGT 23703 ||| || ||||| | | || ||| | | || || || ||| |||| | |||| Sbjct 935958 TCAATGCACATTGATGTGCCGA-TGT-GAAAATCCCATCAATGGAATCGTCCACCATGGT 936015 Query 23704 CGCGACCAAGAAACACGAAGACATTTGC-GCT--TTGGGCGTAGCGGCCGAGAACAGTGT 23760 | | | || || || |||| |||| ||| ||| || || || | ||| || || Sbjct 936016 C---AGTAGAAAGCATGATGACAATTGCGGCTGCTTG---GTGGCAGCAGCGAATAGCGT 936069 Query 23761 CGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATC 23820 || || |||||||| || | | || | | ||||| || ||||| || ||||| Sbjct 936070 TGGAGAAGCATGCGTAAAATAACGTTCGGAAAGCAAGTTGTATGTTTCGATTGCTGCATC 936129 Query 23821 AATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGAC 23880 ||||| || || |||||||||||||| || ||||| | ||| | || |||| ||| || Sbjct 936130 TATGTCTTCGCCATGTATACCGATGGCAACACGCATTAACATATGCTGTGGTCGCTCAAC 936189 Query 23881 CGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTC 23940 | ||| || | ||| | || ||| ||||||| | |||||||| |||||||| | Sbjct 936190 AATTTTGCCATTTAATTTTAGCAAATAGGAACGTTCAAGAGTTTTAAAACCAAAATAATT 936249 Query 23941 ATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAAACGGTACGCATTGGCAGC--G 23998 ||| ||| || || || | | ||||| || || || || | ||||| | || Sbjct 936250 ATAACCAAAATCGCGGTCATAAATAATGGCAGAGTTTAAGCGATCAGCATT--CTGCTTT 936307 Query 23999 ATGATGTTGTAATGAAAATTCGATATCATCGGCGTT 24034 | || || |||||||| | ||||| ||||| ||| Sbjct 936308 ACGACATTATAATGAAAGTCGGATATTATCGGAGTT 936343 >seq2718 Length=1670031 Score = 237 bits (262), Expect = 1e-57 Identities = 387/552 (70%), Gaps = 18/552 (3%) Strand=Plus/Plus Query 57589 AGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATT 57648 |||||||||||||||| ||||| || || |||||||| || ||||| ||| || |||| Sbjct 70788 AGGCAGAAGCATCGTTCTGGACAGTAGAGGAAGTAGATCTTTCTAAAGATATGGATGATT 70847 Query 57649 GGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCG 57708 ||| ||||| || ||| || |||||||| |||||||| || |||||||||| Sbjct 70848 GGGCACGCCTCACTGATAATGAACGACATTTTATTTCCCACGTGTTAGCCTTTTTCGCCG 70907 Query 57709 CATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGA 57768 |||| ||||||||||| || || ||| | || ||| | || | || ||||| ||||||| Sbjct 70908 CATCTGATGGTATTGTGAATGAAAATGTAGTTGAACGCTTCTGCCAGGAAGTCCAAGTGA 70967 Query 57769 CGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGT 57828 | ||||| | ||||| || ||||||||| | || || || || |||||||| ||||||| Sbjct 70968 CAGAGGCACGTTGCTTCTATGGATTTCAAATTGCGATGGAGAATGTGCATTCTGAAATGT 71027 Query 57829 ATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACG--TAGACTGTTCAA 57886 || || | || ||||| || | |||||| ||| | ||| | | | | ||||| Sbjct 71028 ATAGCATATTAATTGATACATATATTAAGGAC-TCGA-AACAAAGGAATTGCTTATTCAA 71085 Query 57887 CGCGATCGAAACAATGCCCGCGATCGCCAAG---AAGGCAGAGTGGTCAATCAAATGGA- 57942 || || || |||||||| || || ||| |||||||| ||| | | |||| Sbjct 71086 TGCTATAGAGACAATGCCTGC---CGTAAAGCGTAAGGCAGATTGGGCGCTTGCTTGGAT 71142 Query 57943 ---TAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAG 57999 | ||| |||||| || | || | |||| || || || ||||| |||| Sbjct 71143 TTCTTCGAAG----TCGGCCAACTTTGGTGAACGTGTAATTGCATTTGCTGCCGTTGAAG 71198 Query 58000 GTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGC 58059 |||| ||||| ||||| ||||| | || || ||| | |||||||| || | |||| Sbjct 71199 GTATTTTCTTCAGTGGCAGTTTTGCTTCGATCTTCTGGCTTAAGAAACGTGGTTTAATGC 71258 Query 58060 CCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTG 58119 | ||| |||| ||| ||| || | || || || || ||||| || ||| ||| || | Sbjct 71259 CAGGCTTGACATTTTCCAATGAACTAATTTCACGAGATGAGGGACTTCATTGTGACTTCG 71318 Query 58120 CGTGCCTAATGT 58131 | || | |||| Sbjct 71319 CATGTTTGATGT 71330 >seq603 Length=780983 Score = 109 bits (120), Expect = 5e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| || ||| |||| || ||||| ||||| | || ||||| || || Sbjct 745797 CATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTC 745856 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | | || | |||||| | ||| || |||||||| | || || || || Sbjct 745857 CGATACCATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCA 745916 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 || ||| | || |||||||||||||||||||| || | | | || || ||| |||| Sbjct 745917 ACAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGA-TGGACGCACACTGTCCGACTATA 745975 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | ||||| || ||||| ||||| ||| | || || Sbjct 745976 ATATTCAGAAGGAATCCACTCTACATTTAGTTCT 746009 >seq2605 Length=276952 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||||||||| || || || || || || ||||| | || ||||| || || Sbjct 241897 ATGCAAATTTTCGTAAAAACCCTTACGGGTAAGACCATCACTCTTGAGGTTGAGCCTTCG 241956 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | ||| || || | ||| || |||||||| | || || || || Sbjct 241957 GATACTATTGAACATGTTAAGGCCAAAATTCAAGATAAGGAAGGAATTCCCCCTGATCAA 242016 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||||||||| || || || || || |||||||| | || || || ||||| Sbjct 242017 CAGCGTCTAATTTTTGCCGGAAAGCAATTGGAAGATGGTCGCACATTGGCTGACTATAAT 242076 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| ||||| || || | ||| | |||||| | || || || || Sbjct 242077 ATTCAGAAAGAGTCTACATTGCATTTAGTACTTCGTCTTAGAGGTGG 242123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445747978703520