Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3107 524 1e-143 seq2718 244 1e-59 >seq3107 Length=1323484 Score = 524 bits (580), Expect = 1e-143 Identities = 1243/1854 (67%), Gaps = 56/1854 (3%) Strand=Plus/Plus Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62126 || ||||||||||| | ||| ||||| ||||| || ||||| |||| ||| | ||| Sbjct 934448 GCTGGTTTCGTACGCAAATAATACATGCCCGTCTTGAGACCTGCCTTCCAGCCGAAGAAA 934507 Query 62127 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62186 || ||| || || || ||| | || || || | || || || | || |||||| Sbjct 934508 TGTATAGAAGTAAGCTTACCATAGTTGGGCTCAGCCACGTGTATGTTGAACGACTGACTT 934567 Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT-GATCGTCTTTTGTGCAATTTC 62245 ||||||||||| || || | |||||||||||||| || ||| || || | ||| || Sbjct 934568 TGATCGATGAATGCACCGCGATCTGCAGCCATTTTGATTGAT-GTTTTCACGGAAATCTC 934626 Query 62246 CCAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAA-GGTTTG--TATTCTGAATGG 62301 ||||| |||||| || | |||| || | | | ||| | || || |||| || |||| Sbjct 934627 CCAAACAGTTTTGTATAGATCGCGTA-TGTGCTGTGGTATGGATTCAATATTTTGTATGG 934685 Query 62302 ATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 62361 | || | | ||||| ||||||| || ||||||| ||| || |||||||| Sbjct 934686 AGCCGCGACTGGTTATAATATTATTCTTCATATCATCATCCCACAAACCCAACTCGGTTA 934745 Query 62362 AAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGT 62421 | | | | | || | || || ||||| ||||| || || | || | || || | Sbjct 934746 GATCGCGCAACAAGTGATGATTTACAACTTGAAATTCACCTGAAAGCACACGACGTGTAT 934805 Query 62422 AAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 62481 ||||||| || || ||||| | |||||||| || |||| |||||| || ||||| | Sbjct 934806 AAATATTGGAAGTGTATGGTTCAAATGACTCATTGTTGCCCATAATTTGTGCTGTTGAAG 934865 Query 62482 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTC--TGATTTTATC 62539 |||| ||||| || || | || |||| || | | ||| ||||| | ||||| || Sbjct 934866 CAGTTGGCATGGGCGCAAGCAGTAAAGAGTTGCGGACACC--ATGTTGCTTTATTTTCTC 934923 Query 62540 TTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAG 62599 || | | ||||||||||||||| | ||| | ||| ||||| Sbjct 934924 CTTCAATTCGGTCCAATTCCAAAGATCAGTTGGTGTTTTATCCCACATGTCATACTGTAG 934983 Query 62600 AATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAG 62659 |||||| ||||| || || ||| | || || ||||| || || || || |||| Sbjct 934984 AATACCCTTACTAACGGGTGAACCTTCGTAAGTTTCATAGGGGCCAAGTTTTTCGGCTAA 935043 Query 62660 TTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATC 62719 || ||||| || || || || || || ||||| ||||| || || | || ||| | | Sbjct 935044 TTCGCAACTAGCTTCCAAGGCGCCATAGTAAATTGTTTCGAATATTTGCTGATTCAAAAG 935103 Query 62720 TTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTG 62779 | |||||| || || |||||||| | | ||| || ||||| || || || || Sbjct 935104 TAATGCTTCTTCACTTTCGTATGGATAACGCATTAAAATTAAAGCGTCAGCAAAACCCTG 935163 Query 62780 AACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCA--GCTTCTGGAATAGGA 62837 || ||||||||||| || | |||||| ||| || |||| || || || | ||| Sbjct 935164 TACTCCAATACCGATGGGACGATGTCTGAAATTCGA--TTTCCTTGCCTCCGGTAAGGGA 935221 Query 62838 TAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTC 62897 |||| |||||| ||||| |||||||| | ||| | || |||| || || Sbjct 935222 TAATGATTAATGTCTATTATTTTATTCAAATTACGTGTAACGGTTTTGGTGACCTC---- 935277 Query 62898 AGTTTGAGAAAATCAAA-TCGCCCATCTATT--------ACAAACATGTTCAATGCAACA 62948 |||||| | ||| ||| | | | || |||||||| ||||| || | Sbjct 935278 --TTTGAGGCGCTTAAAGTCGTACGTTTTTTCGGGTGTGACAAACATATTCAACGCGATT 935335 Query 62949 GATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 63008 || |||| || ||||| |||||||||| || | | ||||| | || || || || Sbjct 935336 GAAGCCAAGTTGCACACAGCTACCTCATCAGGTGCTGAATATTCCACAATTTCGGTACAT 935395 Query 63009 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63068 | |||||||||||| || || || | ||| ||||||||||||||| ||||| ||||| Sbjct 935396 AAATTACTACACTTAATTGTACCAACATTCTGTTGATTACTCTTTCGATTACAAGCATCT 935455 Query 63069 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63128 ||||| | ||| |||| || || || || | || ||||| ||||| ||| | | | Sbjct 935456 TTATACAACATGTATGGTGTGCCGGTCTCCACTTGCGATTCAATAAT-GCTAAACCAAAG 935514 Query 63129 ACTC-GAGCCTTTATTATAG-ATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATC 63186 ||| | || |||| | | ||| | | ||||| || || | ||| ||| ||| Sbjct 935515 ACTTTGTGCTTTTACTTTCTTATTAGCACGTCCTTCCTGTT-CATATTTCAGATATAATT 935573 Query 63187 GTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACG 63246 ||||||||| || ||||| || | | | | ||||| | | |||||||| | || Sbjct 935574 TTTCGAACTCTTCACCCCATACTTCATGTAGACCGGGACACTTGTGTGGACACATTAGCG 935633 Query 63247 ACCACTCTCCGTCATC--CTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 63303 |||| ||| |||| |||| || ||||||||||| |||||||| ||||| | ||| Sbjct 935634 ACCAGTCT---TCATTGGCTTCTACACGTTTCATAAATAGATCAGGTATCCACAAAGCAT 935690 Query 63304 TAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 63363 ||| | |||||| | | ||| || || || || || || || || | ||| | || Sbjct 935691 AAAACAAATCTCTGGCGCGATGCTCTTCTTTCCCAGTGTTTTTCTTCAAATCCAAAAATT 935750 Query 63364 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTC 63423 | |||||||| |||||| ||||||| ||| ||||| | | || || ||||| | Sbjct 935751 GGAAAATATCAGCATGCCATGGTTCCAGGTAGATGGCAAATGCGCCTGGACGTTTACCGC 935810 Query 63424 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGT 63483 | || ||||| | || | || ||||| | |||| |||||| || | | ||||| Sbjct 935811 CACCTTGATCCACATAGCGTGCTACATTATTGAACACTCGCAACATAGGCACCAAACCGT 935870 Query 63484 TTGATATACCATTGGTACCGGAGAT---ATAGCCTCCACTGGCACGAAT---AT-TACTA 63536 ||||| | ||||| ||||| | || | |||| | ||||| || || ||| Sbjct 935871 TTGATGTGCCATTTGTACCCGCAATTGCAGTGCCT---TTTGCACGTATGCAATGTAC-- 935925 Query 63537 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG-TGTC 63595 || ||||| || ||||| || ||| || || ||||| ||| | | | || ||| Sbjct 935926 GTT--CAGACCAATACCCCCAGCAGATTTGGAAATCAATGCACATTGATGTGCCGATGTG 935983 Query 63596 ATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 63655 | | || || || ||| ||| || | |||| | |||||||| || |||| ||| | Sbjct 935984 A-AAATCCCATCAATGGAATCGTCCACCATGGTCAGTAGAAAGCATGATGACAATTGCGG 936042 Query 63656 ACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 63715 | | || | ||| |||| || |||||||| |||||||| | ||| ||||| Sbjct 936043 CTGCTTGGTGGCAGCAGCGAATAGCGTTGGAGAAGCATGCGTAAAATAACGTTCGGAAAG 936102 Query 63716 TAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACG 63775 | ||||| || || || |||| ||||| || ||| || || | || ||||| Sbjct 936103 CAAGTTGTATGTTTCGATTGCTGCATCTATGTCTTCGCCATGTATACCGATGGCAACACG 936162 Query 63776 CATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTT 63835 ||||||||| ||||| |||| |||||||||||| |||| ||| | ||| ||||| Sbjct 936163 CATTAACATATGCTGTGGTCGCTCAACAATTTTGCCATTTAATTTTAGCAAATAGGAACG 936222 Query 63836 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||| | |||||||||||||||||| || || ||| || || || |||||||| Sbjct 936223 TTCAAGAGTTTTAAAACCAAAATAATTATAACCAAAATCGCGGTCATAAATAAT 936276 >seq2718 Length=1670031 Score = 244 bits (270), Expect = 1e-59 Identities = 485/712 (68%), Gaps = 7/712 (1%) Strand=Plus/Minus Query 33407 AATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT 33466 || ||| | ||| || || ||||| ||||| ||| | || |||||||| || || Sbjct 71497 AAGCAAACGATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGAT 71438 Query 33467 GAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTAT 33526 || || || || | ||| |||| | ||||| || ||||| || || | | || Sbjct 71437 TAGATTCACCGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAAT 71378 Query 33527 AATAA-ATCTA-ACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACAT 33584 || | | | ||| | | | ||| ||| |||| |||||||| |||||||||||| Sbjct 71377 TATTTCAACAATACGCT--CATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACAT 71320 Query 33585 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCG 33644 ||||| || || || || ||||| |||| ||||| ||| || ||||| || | || Sbjct 71319 GCGAAGTCACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCT 71260 Query 33645 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATT 33704 ||||||| ||||| || |||||||| || || ||||| || || ||||| || Sbjct 71259 GGCATTAAACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAAATA 71200 Query 33705 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG--CTGTCATGTA-TC 33761 ||||| || |||||||| ||||| | | || ||| | ||| || | | | || Sbjct 71199 CCTTCAACGGCAGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTTCGAAGAAATC 71140 Query 33762 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 33821 || | |||||||| ||||| ||||| |||||| || ||||| ||||| || Sbjct 71139 CAAGCAAGCGCCCAATCTGCCTTACGCTTTACGGCAGGCATTGTCTCTATAGCATTGAAT 71080 Query 33822 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 33881 | | || ||| || || |||| ||| ||||| || || | ||||||||||| Sbjct 71079 AAGCAATTCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCA 71020 Query 33882 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 33941 ||||| | || || || || || |||||||| ||||| || | ||||| || | || Sbjct 71019 GAATGCACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGG 70960 Query 33942 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAA 34001 ||||| || || ||||| ||| |||||||||||| || |||||| || || ||| Sbjct 70959 ACTTCCTGGCAGAAGCGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAA 70900 Query 34002 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG 34061 || || || || || ||||||| | ||| | || || |||||||| Sbjct 70899 AAGGCTAACACGTGGGAAATAAAATGTCGTTCATTATCAGTGAGGCGTGCCCAATCATCC 70840 Query 34062 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 ||||||||||| | ||| ||||| || |||||||| || ||||| ||||||| Sbjct 70839 ATATCTTTAGAAAGATCTACTTCCTCTACTGTCCAGAACGATGCTTCTGCCT 70788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629791572787680