Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq3107 441 7e-119 seq2718 273 2e-68 >seq3107 Length=1323484 Score = 441 bits (488), Expect = 7e-119 Identities = 1222/1853 (66%), Gaps = 48/1853 (3%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || || |||| ||||| ||||| || | ||| || | || ||||||||| || || Sbjct 934421 TCCACAGTAAATTGTATAGCATTTGCAGCTGGTTTCGTACGCAAATAATACATGCCCGTC 934480 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || || || |||| ||| | ||||| ||| || || || | || | || | | Sbjct 934481 TTGAGACCTGCCTTCCAGCCGAAGAAATGTATAGAAGTAAGCTTACCATAGTTGGGCTCA 934540 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | | | ||| | | || ||||||||||| || || ||||| | || || |||||| Sbjct 934541 GCCACGTGTATGTTGAACGACTGACTTTGATCGATGAATGCACCGCGATCTGCAGCCATT 934600 Query 36970 TCTAAAATACAT-TTTTGA--GATATCTCCCAAACCGTTTTATATATTTGTTTTATATTA 37026 | | | || |||| | || ||||||||||| ||||| |||| | ||| | Sbjct 934601 TTGA---TTGATGTTTTCACGGAAATCTCCCAAACAGTTTTGTATAGATCGCGTATGTGC 934657 Query 37027 TCTGGTA---AATCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATG 37083 | ||||| | || | || ||| || || || | | ||| ||||||| || Sbjct 934658 TGTGGTATGGATTCAATATTTTGTATGGAGCCGCGACTGGTTATAATATTATTCTTCATA 934717 Query 37084 TCATTATTCCACATATTTCTACTTA-TTAGTTCTCTCAATAGGTGTGGATTTACAACCTG 37142 |||| || ||||| | | ||| |||| || | ||| | ||| |||||||||| || Sbjct 934718 TCATCATCCCACAAACC-CAACTCGGTTAGATCGCGCAACAAGTGATGATTTACAACTTG 934776 Query 37143 AAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTC 37202 ||| || || || | || | | |||||| |||||| ||| |||||||||| ||||| Sbjct 934777 AAATTCACCTGAAAGCACACGACGTGTATAAATATTGGAAGTGTATGGTTCAAATGACTC 934836 Query 37203 ATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATT 37262 ||| || | | ||||| | ||| || ||||| ||||| || || | || | || Sbjct 934837 ATTGTTGCCCATAATTTGTGCTGTTGAAGCAGTTGGCATGGGCGCAAGCAGTAAAGAGTT 934896 Query 37263 TCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG 37322 | | |||||| || ||| ||| || | ||| |||||| ||| | ||| ||||| Sbjct 934897 GCGGACACCATGTTGCTTTATTTTCTCCTTCAATTCGGTCCAATTCCAAAGATCAGTTGG 934956 Query 37323 GTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGT 37382 | || |||||| ||||| ||||||||||| ||||| | || ||| | | || || Sbjct 934957 TGTTTTATCCCACATGTCATACTGTAGAATACCCTTACTAACGGGTGAACCTTCGTAAGT 935016 Query 37383 CTCATAAGGTCCGTAAATTTT--AGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATAT 37440 ||||| || || || |||| |||| ||||||||||| ||| | ||| |||| || Sbjct 935017 TTCATAGGGGCC--AAGTTTTTCGGCTAATTCGCAACTAGCTTCCAAGGCGCCATAGTAA 935074 Query 37441 ATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCC 37500 ||||||||||| ||||| ||| || | | ||||||||| || ||| ||| ||| | | Sbjct 935075 ATTGTTTCGAATATTTGCTGATTCAAAAGTAATGCTTCTTCACTTTCGTATGGATAACGC 935134 Query 37501 AATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTA 37560 | ||| || || | ||||| |||||||| || || ||||| ||||| | |||| | | Sbjct 935135 ATTAAAATTAAAGCGTCAGCAAAACCCTGTACTCCAATACCGATGGGACGATGTCTGAAA 935194 Query 37561 TTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATT- 37619 || ||| | | || | ||||||| ||| || |||||||||||||| | ||| Sbjct 935195 TTCGATTTCCTTGCCTCCGGTAAGGGATAATGATTAATGTCTATTATTTTATTCAAATTA 935254 Query 37620 --TTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAA----TACGTTATT 37673 | |||| |||| || | ||| ||| | | |||| |||||| || Sbjct 935255 CGTGTAAC---GGTTTTGGTGA----CCTC--TTTGAGGCGCTTAAAGTCGTACGTTTTT 935305 Query 37674 -----ATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCT 37728 | ||||| || |||||| || || | | || || ||||| || ||||| Sbjct 935306 TCGGGTGTGACAAACATATTCAACGCGATTGAAGCCAAGTTGCACACAGCTACCTCATC- 935364 Query 37729 TCGTTACT--AAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAAT 37786 | | || | ||| | ||| || ||||| | |||||| | ||||||| || | || Sbjct 935365 -AGGTGCTGAATATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTACCAACAT 935423 Query 37787 TGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTT 37846 | |||||| ||| |||||||| ||||||||| | || || || || || | Sbjct 935424 TCTGTTGATTACTCTTTCGATTACAAGCATCTTTATACAACATGTATGGTGTGCCGGTCT 935483 Query 37847 CTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTA--At 37904 | | ||| | || ||||| ||| | |||| |||||| || || ||| | Sbjct 935484 CCACTTGCGATTCAATAATGCTAAACCAAAGACTTTGTGCTTTTACTTTCTTATTAGCAC 935543 Query 37905 ttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCA 37964 | ||| | ||| |||| | ||||||||| | || || | |||||||| || Sbjct 935544 GTCCTTCCT--GTTCATATTTCAGATATAATTTTTCGAACTCTTCACCCCATACTTCATG 935601 Query 37965 TAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTC 38024 || || ||||| | | |||||||||||| ||||| ||||||| |||||| |||| Sbjct 935602 TAGACCGGGACACTTGTGTGGACACATTAGCGACCAGTCTTCATTGGCTTCTACACGTTT 935661 Query 38025 CATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTT 38084 |||||||| |||||||| ||| || ||| ||| |||||| ||| | || ||||| || Sbjct 935662 CATAAATAGATCAGGTATCCACAAAGCATAAAACAAATCTCTGGCGCGATGCTCTTCTTT 935721 Query 38085 CCCTACATTCTTTCTT-AAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATAT 38143 ||| | | |||||| || | ||| | ||| |||||||| ||||||||||| | | Sbjct 935722 CCC-AGTGTTTTTCTTCAAATCCAAAAATTGGAAAATATCAGCATGCCATGGTTCCAGGT 935780 Query 38144 AAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTAT 38203 | || | | ||| ||||| | |||| | || || |||| | ||| | || |||| Sbjct 935781 AGATGGCAAATGCGCCTGGACGTTTACCGCCACCTTGATCCACATAGCGTGCTACATTAT 935840 Query 38204 TATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAG 38263 | | | || |||||||| || | ||| || ||| |||| ||| |||| | || || Sbjct 935841 TGAACACTCGCAACATAGGCACCAAACCGTTTGATGTGCCATTTGTACCCGCAATTGCAG 935900 Query 38264 TACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTA 38323 | || || || ||||| | || || || || || || ||| ||| || || | Sbjct 935901 TGCCTTTTGCACGTATGCAATGTACGTTCAGACCAATACCCCCAGCAGATTTGGAAATCA 935960 Query 38324 AAGCGCATTGTTTTAACG-TATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGT 38382 | || ||||| | | || | | ||| || || || || || ||| || | ||| Sbjct 935961 ATGCACATTGATGTGCCGATGTGAAA-ATCCCATCAATGGAATCGTCCACCATGGTCAGT 936019 Query 38383 ATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCA 38442 | ||| || |||| ||| ||| || | || |||| || ||||| ||| Sbjct 936020 AGAAAGCATGATGACAATTGCGGCTGCTTGGTGGCAGCAGCGAATAGCGTTGGAGAAGCA 936079 Query 38443 TGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCG 38502 || | || | ||| || | | || |||||||| ||| | ||||||| || || Sbjct 936080 TGCGTAAAATAACGTTCGGAAAGCAAGTTGTATGTTTCGATTGCTGCATCTATGTCTTCG 936139 Query 38503 CCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTA 38562 || || ||||| | | || | ||||| |||||| ||||||| || | ||||| | Sbjct 936140 CCATGTATACCGATGGCAACACGCATTAACATATGCTGTGGTCGCTCAACAATTTTGCCA 936199 Query 38563 TTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATA 38615 || ||| || | ||| || ||| | ||||| | ||||||||| |||| Sbjct 936200 TTTAATTTTAGCAAATAGGAACGTTCAAGAGTTTTAAAACCAAAATAATTATA 936252 >seq2718 Length=1670031 Score = 273 bits (302), Expect = 2e-68 Identities = 480/692 (69%), Gaps = 13/692 (2%) Strand=Plus/Minus Query 11464 ATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCAC 11523 ||| || || ||||| ||||| | ||||||| ||||||||||| || |||| ||| Sbjct 71488 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAGATTCAC 71429 Query 11524 CGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTAT--CGAC 11581 ||| | ||| | || || || |||| || || ||||| || ||| ||||| | || Sbjct 71428 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTATTTCAAC 71369 Query 11582 GTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCA 11641 ||| || ||| |||| |||| |||||||| ||||| ||||| || || ||| Sbjct 71368 A--ATACGCTCATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACATGCGAAGTCA 71311 Query 11642 CAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAAT 11701 ||||| | || || |||| ||||||||||| |||||||| || || ||||| || Sbjct 71310 CAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCATTAAA 71251 Query 11702 CCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACA 11761 || ||||| || | ||| || || | |||||| ||| ||||| || || || || Sbjct 71250 CCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAAATACCTTCAACG 71191 Query 11762 GCTGCAAATGCTACTACTCTTTCTCCATATA---CCTTGTTGCTAGATATCCATTTTCTG 11818 || |||||||| | ||| | ||| ||| | || || ||| ||||| Sbjct 71190 GCAGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTTCGAAGAAATCCAAGCAAGC 71131 Query 11819 GCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATT 11878 |||||||| || || |||||| |||||| |||||||| || ||||| ||| | Sbjct 71130 GCCCAATCTGCCTTACGCTTTACGGCAGGCATTGTCTCTATAGCATTGAATAA--GCAAT 71073 Query 11879 T--TTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAA 11936 | ||| | | || | | ||||||||| ||||||| ||||||||||| ||||| | Sbjct 71072 TCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCAGAATGCA 71013 Query 11937 TATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACT-GTACATCC 11995 ||| ||||| || ||||||||||||||||| || |||||||||| |||| | || ||| Sbjct 71012 CATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGT-CACTTGGACTTCC 70954 Query 11996 ACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCT 12055 | || | ||| ||| ||| ||||| |||||||||||| | || ||||| ||| Sbjct 70953 TGGCAGAAGCGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAGGCT 70894 Query 12056 AGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCT 12115 | | || ||||| | | ||| | | ||| | |||||||||| | |||| Sbjct 70893 AACACGTGGGAAATAAAATGTCGTTCATTATCAGTGAGGCGTGCCCAATCATCCATATCT 70834 Query 12116 TTTGATAAATCTACTTCTTCAACGGTCCAAAA 12147 || || | ||||||||| || || ||||| || Sbjct 70833 TTAGAAAGATCTACTTCCTCTACTGTCCAGAA 70802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468505438212640