Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3107 517 1e-141 seq2718 286 5e-72 >seq3107 Length=1323484 Score = 517 bits (572), Expect = 1e-141 Identities = 1245/1857 (67%), Gaps = 44/1857 (2%) Strand=Plus/Plus Query 64860 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 64919 || ||||||||||| | ||| ||||| ||||| || ||||| |||| ||| | ||| Sbjct 934448 GCTGGTTTCGTACGCAAATAATACATGCCCGTCTTGAGACCTGCCTTCCAGCCGAAGAAA 934507 Query 64920 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 64979 || ||| || || || ||| | || || || | || || || | || |||||| Sbjct 934508 TGTATAGAAGTAAGCTTACCATAGTTGGGCTCAGCCACGTGTATGTTGAACGACTGACTT 934567 Query 64980 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT-GATCGTCTTTTGTGGAATTTC 65038 ||||||||||| || || | |||||||||||||| || ||| || || | ||| || Sbjct 934568 TGATCGATGAATGCACCGCGATCTGCAGCCATTTTGATTGAT-GTTTTCACGGAAATCTC 934626 Query 65039 CCAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAA-GGTTTG--TATTCTGAATGG 65094 ||||| |||||| || | |||| || | | | ||| | || || |||| || |||| Sbjct 934627 CCAAACAGTTTTGTATAGATCGCGTA-TGTGCTGTGGTATGGATTCAATATTTTGTATGG 934685 Query 65095 ATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 65154 | || | | | ||||| ||||||| || ||||||| ||| || |||||||| Sbjct 934686 AGCCGCGACTGGTTATAATATTATTCTTCATATCATCATCCCACAAACCCAACTCGGTTA 934745 Query 65155 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 65214 | | | | | || |||| || ||||||||||| || || | || | || || | Sbjct 934746 GATCGCGCAACAAGTGATGATTTACAACTTGAAATTCACCTGAAAGCACACGACGTGTAT 934805 Query 65215 AAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 65274 ||||||| || || ||||| | |||||||| || |||| |||||| || ||||| | Sbjct 934806 AAATATTGGAAGTGTATGGTTCAAATGACTCATTGTTGCCCATAATTTGTGCTGTTGAAG 934865 Query 65275 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTC--TGATTTTATC 65332 |||| ||||| || || | || |||| || | | ||| ||||| | ||||| || Sbjct 934866 CAGTTGGCATGGGCGCAAGCAGTAAAGAGTTGCGGACACC--ATGTTGCTTTATTTTCTC 934923 Query 65333 TTTTAGA--GGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGT 65390 || | ||| ||||||||||||||| | ||| ||| Sbjct 934924 CTTCAATTCGGT--CCAATTCCAAAGATCAGTTGGTGTTTTATCCCACATGTCATACTGT 934981 Query 65391 AGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCT 65450 |||||||| ||||| || || ||| | || || || || || || || || ||| Sbjct 934982 AGAATACCCTTACTAACGGGTGAACCTTCGTAAGTTTCATAGGGGCCAAGTTTTTCGGCT 935041 Query 65451 AGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGA 65510 | ||| ||||| || || || || || || ||||| |||||||| || | || ||| | | Sbjct 935042 AATTCGCAACTAGCTTCCAAGGCGCCATAGTAAATTGTTTCGAATATTTGCTGATTCAAA 935101 Query 65511 TCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCT 65570 | |||||| || || |||||||| | | ||| || ||||| || || || Sbjct 935102 AGTAATGCTTCTTCACTTTCGTATGGATAACGCATTAAAATTAAAGCGTCAGCAAAACCC 935161 Query 65571 TGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCA--GCTTCTGGAATAG 65628 || || ||||||||||| || | |||||| ||| || |||| || || || | | Sbjct 935162 TGTACTCCAATACCGATGGGACGATGTCTGAAATTCGA--TTTCCTTGCCTCCGGTAAGG 935219 Query 65629 GATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCT 65688 |||||| |||||| ||||| |||||||| | ||| | || |||| || || | Sbjct 935220 GATAATGATTAATGTCTATTATTTTATTCAAATTACGTGTAACGGTTTTGGTGACCTCTT 935279 Query 65689 TCAGTTTGAGAAAATCAAATCGCTCATC---TATTACAAACATGTTCAATGCAACAGATG 65745 | || ||| || | | || | | |||||||| ||||| || | || | Sbjct 935280 TGAGGCGCTTAAAGTCGTACGTTTTTTCGGGTGTGACAAACATATTCAACGCGATTGAAG 935339 Query 65746 CCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGAT 65805 ||| || || || |||||||||| || | | ||||| | || || || || | || Sbjct 935340 CCAAGTTGCACACAGCTACCTCATCAGGTGCTGAATATTCCACAATTTCGGTACATAAAT 935399 Query 65806 TACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTAT 65865 |||||||||| || || || | ||| ||||||||||||||| ||||| ||||| |||| Sbjct 935400 TACTACACTTAATTGTACCAACATTCTGTTGATTACTCTTTCGATTACAAGCATCTTTAT 935459 Query 65866 AAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC 65925 | | ||| |||| || || || || | || ||||| ||||| ||| | | |||| Sbjct 935460 ACAACATGTATGGTGTGCCGGTCTCCACTTGCGATTCAATAAT-GCTAAACCAAAGACTT 935518 Query 65926 -GAGCCTTTATTATAG-ATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTC 65983 | || |||| | | ||| | | || || || || | ||| ||| ||| ||| Sbjct 935519 TGTGCTTTTACTTTCTTATTAGCACGTCCTTCCTGTT-CATATTTCAGATATAATTTTTC 935577 Query 65984 GAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCA 66043 |||||| || ||||| || | | | || ||||| | | |||||||| | |||||| Sbjct 935578 GAACTCTTCACCCCATACTTCATGTAGACCGGGACACTTGTGTGGACACATTAGCGACCA 935637 Query 66044 CTCTCCGTCATC--CTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 66100 ||| |||| |||| || ||||||||||| |||||||| ||||| | ||| ||| Sbjct 935638 GTCT---TCATTGGCTTCTACACGTTTCATAAATAGATCAGGTATCCACAAAGCATAAAA 935694 Query 66101 TAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 66160 |||||||||| | ||| || || || || || || || || | ||| | || | Sbjct 935695 CAAATCTCTGGCGCGATGCTCTTCTTTCCCAGTGTTTTTCTTCAAATCCAAAAATTGGAA 935754 Query 66161 AATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 66220 ||||||| |||||| ||||||| ||| ||||| | | || || ||||| || || Sbjct 935755 AATATCAGCATGCCATGGTTCCAGGTAGATGGCAAATGCGCCTGGACGTTTACCGCCACC 935814 Query 66221 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 66280 ||||| | || | || ||||| | |||| |||||| || | | ||| || || Sbjct 935815 TTGATCCACATAGCGTGCTACATTATTGAACACTCGCAACATAGGCACCAAACCGTTTGA 935874 Query 66281 TGTACCATTGGT-CCCGGAGATATAGCTTCCACTTGCACGAAT---AT-TACTAATTGAT 66335 ||| ||||| || |||| | | || | || ||||||| || || ||| || | Sbjct 935875 TGTGCCATTTGTACCCGCAATTGCAG-TGCCTTTTGCACGTATGCAATGTACG--TTCA- 935930 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG-TATCATAGAT 66394 |||| || ||||| || ||| || || ||||| ||| | | | || | | | | || Sbjct 935931 -GACCAATACCCCCAGCAGATTTGGAAATCAATGCACATTGATGTGCCGATGTGAAA-AT 935988 Query 66395 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 66454 || || || ||| |||| |||| | |||||||| || |||| ||| | | | Sbjct 935989 CCCATCAATGGAATCGTCCACCATGGTCAGTAGAAAGCATGATGACAATTGCGGCTGCTT 936048 Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 || | ||| |||| || |||||||| |||||||| | ||| ||||| | || Sbjct 936049 GGTGGCAGCAGCGAATAGCGTTGGAGAAGCATGCGTAAAATAACGTTCGGAAAGCAAGTT 936108 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 66574 ||| || || || |||| ||||| || ||| || || | || ||||||||||| Sbjct 936109 GTATGTTTCGATTGCTGCATCTATGTCTTCGCCATGTATACCGATGGCAACACGCATTAA 936168 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 ||| ||||| |||| ||||| || ||| |||| ||| | ||| ||||| ||| | Sbjct 936169 CATATGCTGTGGTCGCTCAACAATTTTGCCATTTAATTTTAGCAAATAGGAACGTTCAAG 936228 Query 66635 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 66691 |||||||||||||||||| || || ||| || || || |||||||| | ||||| Sbjct 936229 AGTTTTAAAACCAAAATAATTATAACCAAAATCGCGGTCATAAATAATGGCAGAGTT 936285 >seq2718 Length=1670031 Score = 286 bits (316), Expect = 5e-72 Identities = 493/712 (69%), Gaps = 7/712 (1%) Strand=Plus/Minus Query 35983 AATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT 36042 || ||| | ||| || |||||||| ||||| ||| | || |||||||| || || Sbjct 71497 AAGCAAACGATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGAT 71438 Query 36043 AAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTAT 36102 || || || || | ||| |||| | ||||| || ||||| || || || | || Sbjct 71437 TAGATTCACCGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAAT 71378 Query 36103 AATAG--ATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACAT 36160 || | | ||| | | | ||| ||| | | |||||||| |||||||||||| Sbjct 71377 TATTTCAACAATACGCT--CATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACAT 71320 Query 36161 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 36220 ||||| || || || || ||||| |||| ||||| ||| |||||||| || | || Sbjct 71319 GCGAAGTCACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCT 71260 Query 36221 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATT 36280 ||||||| ||||| || |||||||| || || || ||||| ||| |||||||| Sbjct 71259 GGCATTAAACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAAATA 71200 Query 36281 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--ACTGTCATGTA-TC 36337 ||||| || || ||||| ||||| | | || ||| | ||| ||| | | | || Sbjct 71199 CCTTCAACGGCAGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTTCGAAGAAATC 71140 Query 36338 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAG 36397 || | |||||||| ||||| ||||| ||||||||||||||||||||| || Sbjct 71139 CAAGCAAGCGCCCAATCTGCCTTACGCTTTACGGCAGGCATTGTCTCTATAGCATTGAAT 71080 Query 36398 AGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCC 36457 | | || ||| || || |||| |||||||||||| || | ||||||||||| Sbjct 71079 AAGCAATTCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCA 71020 Query 36458 GAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT 36517 ||||| | || || || || ||||||||||| ||||| || | ||||| || | || Sbjct 71019 GAATGCACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGG 70960 Query 36518 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 36577 ||||| || || ||||| ||| |||||||||||| || || ||| || || ||| Sbjct 70959 ACTTCCTGGCAGAAGCGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAA 70900 Query 36578 AACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTG 36637 || || || || || ||||||| | ||| || || || |||||||| Sbjct 70899 AAGGCTAACACGTGGGAAATAAAATGTCGTTCATTATCAGTGAGGCGTGCCCAATCATCC 70840 Query 36638 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 36689 ||||||||||| | ||| ||||| || |||||||| || ||||| ||||||| Sbjct 70839 ATATCTTTAGAAAGATCTACTTCCTCTACTGTCCAGAACGATGCTTCTGCCT 70788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658145601009040