Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq603 136 4e-27 seq2605 107 2e-18 seq3107 98.7 1e-15 >seq603 Length=780983 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || |||| ||| | ||| || |||| |||||||| || || ||||| |||||| Sbjct 745797 GCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGA 745738 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| |||||| || |||||||| ||| |||| | |||||| ||||| || || Sbjct 745737 CAGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGG 745678 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||||||||| ||| | || | |||| | | ||| | || |||| || || | Sbjct 745677 GATTCCTTCTTTGTC-TTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAA 745619 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | |||||||| ||||| || || ||||| |||||||| Sbjct 745618 CCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 745570 >seq2605 Length=276952 Score = 107 bits (118), Expect = 2e-18 Identities = 165/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | ||| | ||||| || | ||||||||||| ||||| ||||| || Sbjct 242124 GCCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGC 242065 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || ||||| ||||| | || || || ||| | || ||||| || ||||| || || Sbjct 242064 CAATGTGCGACCATCTTCCAATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGGGG 242005 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||| || || ||| |||| | ||| | ||||| | || || | ||||| | Sbjct 242004 AATTCCTTCCTTATCT-TGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGCTCAA 241946 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 |||||| || | ||||| || || | ||||||||||| |||||||| ||| Sbjct 241945 CCTCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAAAATTTGCATTGCT 241893 >seq3107 Length=1323484 Score = 98.7 bits (108), Expect = 1e-15 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 152721 ACGGTAAATTGCTGGGAATTGGCCGCCGGAAGCGTACGAAAATAGTACATGCCCGTCTTG 152780 || |||||||| | ||| || || || |||||| ||||| ||||||||||||||| Sbjct 934424 ACAGTAAATTGTATAGCATTTGCAGCTGGTTTCGTACGCAAATAATACATGCCCGTCTTG 934483 Query 152781 AGGCCACGTTGCCAGCCGTACATGTGCACCGACGCCATCTTAGCCAAAGTAGGG-TCGGC 152839 || || | ||||||| | | || | || | | |||| ||| ||| ||| || || Sbjct 934484 AGACCTGCCTTCCAGCCGAAGAAATGTATAGAAGTAAGCTTA-CCATAGTTGGGCTCAGC 934542 Query 152840 CATGTACACGTTAAACGATTGACTTTGATCAATAAATGCGCCTCTATCTGCTGCCATGTC 152899 || || | ||| ||||| ||||||||||| || ||||| || | |||||| ||||| | Sbjct 934543 CACGTGTATGTTGAACGACTGACTTTGATCGATGAATGCACCGCGATCTGCAGCCATTTT 934602 Query 152900 GAT 152902 ||| Sbjct 934603 GAT 934605 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 153633 GCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTACTATTTCC 153692 || || || ||||||||||| || || || || || || |||||| || ||||| Sbjct 935330 GCGATTGAAGCCAAGTTGCACACAGCTACCTCATCAGGTGCTGAATATTCCACAATTTCG 935389 Query 153693 GCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTGCGGTTACAA 153752 | ||| ||||| || || || || || ||| |||||| || || || |||||| Sbjct 935390 GTACATAAATTACTACACTTAATTGTACCAACATTCTGTTGATTACTCTTTCGATTACAA 935449 Query 153753 GCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATTTCTATAAT 153805 || || || || | |||||||||||||||||| || |||| ||| ||||| Sbjct 935450 GCATCTTTATACAACATGTATGGTGTGCCGGTCTCCACTTGCGATTCAATAAT 935502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496043500155200