Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3107 616 2e-171 seq2718 271 1e-67 >seq3107 Length=1323484 Score = 616 bits (682), Expect = 2e-171 Identities = 1269/1862 (68%), Gaps = 54/1862 (3%) Strand=Plus/Plus Query 78739 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAA 78798 || ||||||||||| | ||| ||||| ||||| || ||||| |||| ||| ||||| Sbjct 934448 GCTGGTTTCGTACGCAAATAATACATGCCCGTCTTGAGACCTGCCTTCCAGCCGAAGAAA 934507 Query 78799 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 78858 || ||| || || || ||| | || || || | || || || | || |||||| Sbjct 934508 TGTATAGAAGTAAGCTTACCATAGTTGGGCTCAGCCACGTGTATGTTGAACGACTGACTT 934567 Query 78859 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT-GATCGTCTTTTGTGGAATTTC 78917 ||||||||||| || || | |||||||||||||| || ||| || || | ||| || Sbjct 934568 TGATCGATGAATGCACCGCGATCTGCAGCCATTTTGATTGAT-GTTTTCACGGAAATCTC 934626 Query 78918 CCAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAA-GGTTTG--TATTCTGAATGG 78973 ||||| |||||| || | |||| || | | | ||| | || || |||| || |||| Sbjct 934627 CCAAACAGTTTTGTATAGATCGCGTA-TGTGCTGTGGTATGGATTCAATATTTTGTATGG 934685 Query 78974 ATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTA 79033 | || | | | ||||| ||||||| || || |||| ||| || |||||||| Sbjct 934686 AGCCGCGACTGGTTATAATATTATTCTTCATATCATCATCCCACAAACCCAACTCGGTTA 934745 Query 79034 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 79093 | | | | | || |||| || ||||||||||| || || | || | || || | Sbjct 934746 GATCGCGCAACAAGTGATGATTTACAACTTGAAATTCACCTGAAAGCACACGACGTGTAT 934805 Query 79094 AAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATG 79153 ||||||| || |||||||| | || ||||| || |||| |||||| || ||||| | Sbjct 934806 AAATATTGGAAGTGTATGGTTCAAATGACTCATTGTTGCCCATAATTTGTGCTGTTGAAG 934865 Query 79154 CCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTT 79213 | |||||||| || || | || |||| || | | ||| | | | ||||| || | Sbjct 934866 CAGTTGGCATGGGCGCAAGCAGTAAAGAGTTGCGGACACCATGTTGCTTTATTTTCTCCT 934925 Query 79214 TTAGAGATTC---CCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTA 79270 | | |||| ||||| ||||||||||| || || ||| | ||||| |||| Sbjct 934926 TCA---ATTCGGTCCAATTCCAAAGATCAGTTGGTGTTTTATCCCACATGTCATACTGTA 934982 Query 79271 GAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTA 79330 ||||||| |||||| || ||| ||| ||| |||||||| || || |||||||||| Sbjct 934983 GAATACCCTTACTAACGGGTGAACCTTCGTAAGTTTCATAGGGGCCAAGTTTTTCGGCTA 935042 Query 79331 ATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGAT 79390 |||| ||||| || || || || || || ||||| |||||||| || | || ||| | | Sbjct 935043 ATTCGCAACTAGCTTCCAAGGCGCCATAGTAAATTGTTTCGAATATTTGCTGATTCAAAA 935102 Query 79391 CTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTT 79450 | ||||||| || || |||||||| | | ||| || ||||| || || || | Sbjct 935103 GTAATGCTTCTTCACTTTCGTATGGATAACGCATTAAAATTAAAGCGTCAGCAAAACCCT 935162 Query 79451 GAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTC--AGCTTCTGGAATAGG 79508 | || ||||||||||| || | |||||| ||| | ||||| || || || | || Sbjct 935163 GTACTCCAATACCGATGGGACGATGTCTGAAATTCG--ATTTCCTTGCCTCCGGTAAGGG 935220 Query 79509 ATAATAATTAATATCTATAATTTTATTGAGATTCC---TGACTATTACTTTGACCACATC 79565 ||||| |||||| ||||| |||||||| | ||| | | || || ||||| | Sbjct 935221 ATAATGATTAATGTCTATTATTTTATTCAAATTACGTGTAACGGTTTTGGTGACCTC--- 935277 Query 79566 CTTTAGTTTGAGAAAATCAAA-TCGTCCATCTATT--------ACAAACATGTTCAACGC 79616 |||||| | ||| |||| | | | || |||||||| |||||||| Sbjct 935278 ------TTTGAGGCGCTTAAAGTCGTACGTTTTTTCGGGTGTGACAAACATATTCAACGC 935331 Query 79617 GACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGT 79676 || || |||| || || || |||||||||| || | | ||||| | ||||| || Sbjct 935332 GATTGAAGCCAAGTTGCACACAGCTACCTCATCAGGTGCTGAATATTCCACAATTTCGGT 935391 Query 79677 GCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGC 79736 || | |||||||||||||| || || | ||| ||||||||||||||| ||||| || Sbjct 935392 ACATAAATTACTACACTTAATTGTACCAACATTCTGTTGATTACTCTTTCGATTACAAGC 935451 Query 79737 ATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 79796 ||| ||||| | ||| | || || || || || | || ||||| ||||| ||| | Sbjct 935452 ATCTTTATACAACATGTATGGTGTGCCGGTCTCCACTTGCGATTCAATAAT-GCTAAACC 935510 Query 79797 GACGAC-TCGAGCCTTTA-TTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATAT 79854 | ||| | | || |||| || | | | | || || || ||| |||| |||| Sbjct 935511 AAAGACTTTGTGCTTTTACTTTCTTATTAGCACGTCCTTCCT-GTTCATATTTCAGATAT 935569 Query 79855 AATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATC 79914 ||| ||||||||| || ||||| || || | || || ||||| | || |||||||| Sbjct 935570 AATTTTTCGAACTCTTCACCCCATACTTCATGTAGACCGGGACACTTGTGTGGACACATT 935629 Query 79915 AACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 79974 | |||||| ||| ||| | | ||| ||||||||||| |||||||| ||||| | ||| Sbjct 935630 AGCGACCAGTCTTCATTGGCTTCTACACGTTTCATAAATAGATCAGGTATCCACAAAGCA 935689 Query 79975 ATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 80034 ||| | |||||||| | |||||| || || || || || || || | ||| | || Sbjct 935690 TAAAACAAATCTCTGGCGCGATGCTCTTCTTTCCCAGTGTTTTTCTTCAAATCCAAAAAT 935749 Query 80035 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTT 80094 | |||||||| |||||| ||||||| ||| ||||| | | || || ||||| Sbjct 935750 TGGAAAATATCAGCATGCCATGGTTCCAGGTAGATGGCAAATGCGCCTGGACGTTTACCG 935809 Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 || || ||||| | || | || ||||| | |||| |||||| || | | ||| Sbjct 935810 CCACCTTGATCCACATAGCGTGCTACATTATTGAACACTCGCAACATAGGCACCAAACCG 935869 Query 80155 TTGGATGTACCATTGGT-CCCGGAGATATAGCTTCCACTGGCACGAAT---AT-TACTAA 80209 || ||||| ||||| || |||| | | || | || | ||||| || || ||| Sbjct 935870 TTTGATGTGCCATTTGTACCCGCAATTGCAG-TGCCTTTTGCACGTATGCAATGTAC--G 935926 Query 80210 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG-TATCA 80268 || ||||| || ||||| || ||| || || ||||| ||| | | | || | | | Sbjct 935927 TT--CAGACCAATACCCCCAGCAGATTTGGAAATCAATGCACATTGATGTGCCGATGTGA 935984 Query 80269 TAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 80328 | || || || ||| ||| || | |||| | |||||||| || |||| ||| | Sbjct 935985 -AAATCCCATCAATGGAATCGTCCACCATGGTCAGTAGAAAGCATGATGACAATTGCGGC 936043 Query 80329 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGT 80388 | | || | ||| |||| || |||||||| |||||||| | ||| || || Sbjct 936044 TGCTTGGTGGCAGCAGCGAATAGCGTTGGAGAAGCATGCGTAAAATAACGTTCGGAAAGC 936103 Query 80389 AGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGC 80448 | ||||| || || || |||| ||||| || ||| || || | || |||||| Sbjct 936104 AAGTTGTATGTTTCGATTGCTGCATCTATGTCTTCGCCATGTATACCGATGGCAACACGC 936163 Query 80449 ATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTT 80508 |||||||| ||||| |||| ||||| || ||| ||||| ||| | ||| || || | Sbjct 936164 ATTAACATATGCTGTGGTCGCTCAACAATTTTGCCATTTAATTTTAGCAAATAGGAACGT 936223 Query 80509 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAG 80568 || | |||||||||||||||||| || || ||| || || || |||||||| | ||| Sbjct 936224 TCAAGAGTTTTAAAACCAAAATAATTATAACCAAAATCGCGGTCATAAATAATGGCAGAG 936283 Query 80569 TT 80570 || Sbjct 936284 TT 936285 >seq2718 Length=1670031 Score = 271 bits (300), Expect = 1e-67 Identities = 491/712 (69%), Gaps = 7/712 (1%) Strand=Plus/Minus Query 49785 AATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT 49844 || ||| | ||| || |||||||| ||||| ||| | || |||||||| || || Sbjct 71497 AAGCAAACGATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGAT 71438 Query 49845 AAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTAT 49904 || || || || | ||| |||| | ||||| || ||||| || || || | || Sbjct 71437 TAGATTCACCGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAAT 71378 Query 49905 AATAG-ATCTA-ACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACAT 49962 || | | | ||| | | | ||| ||| || | |||||||| |||||||||||| Sbjct 71377 TATTTCAACAATACGCT--CATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACAT 71320 Query 49963 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 50022 ||||| || || || || ||||| |||| ||||||||| |||||||| || | || Sbjct 71319 GCGAAGTCACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCT 71260 Query 50023 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATT 50082 ||||||| ||||| || |||||||| || || || ||||| ||| ||||| || Sbjct 71259 GGCATTAAACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAAATA 71200 Query 50083 CCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG--CTGTCATGTA-TC 50139 ||||| || || ||||| |||| | | || ||| | |||| || | | | || Sbjct 71199 CCTTCAACGGCAGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTTCGAAGAAATC 71140 Query 50140 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 50199 || | |||||||| ||||| ||||| |||||| || ||||| ||||| || Sbjct 71139 CAAGCAAGCGCCCAATCTGCCTTACGCTTTACGGCAGGCATTGTCTCTATAGCATTGAAT 71080 Query 50200 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 50259 | | || ||| || || |||| ||| ||||| || || | ||||||||||| Sbjct 71079 AAGCAATTCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCA 71020 Query 50260 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 50319 ||||| | || || || || || |||||||| ||||| || | ||||| || | || Sbjct 71019 GAATGCACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGG 70960 Query 50320 ACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 50379 ||||| || || |||||| ||| |||||||||||| || || ||| || || ||| Sbjct 70959 ACTTCCTGGCAGAAGCGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAA 70900 Query 50380 AACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTG 50439 || || || || || ||||||||| ||| || || || |||||||| Sbjct 70899 AAGGCTAACACGTGGGAAATAAAATGTCGTTCATTATCAGTGAGGCGTGCCCAATCATCC 70840 Query 50440 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491 ||||||||||| | ||||||||| || |||||||| || ||||| ||||||| Sbjct 70839 ATATCTTTAGAAAGATCTACTTCCTCTACTGTCCAGAACGATGCTTCTGCCT 70788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718239117541840