Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2718 253 2e-62 >seq2718 Length=1670031 Score = 253 bits (280), Expect = 2e-62 Identities = 490/715 (69%), Gaps = 16/715 (2%) Strand=Plus/Minus Query 13686 CCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13745 ||||| || | || || | |||||| | ||| || ||||| | ||||||| | ||| Sbjct 71508 CCTAGCTCGACAAGCAAACGATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAA 71449 Query 13746 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 13805 |||||||| ||||| || || || | | ||||| ||||| | || || ||| Sbjct 71448 TTCATACCGATTAGATTCACCGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACA 71389 Query 13806 GCCTCTTTTATAATAATTGTAATAAT---CTCATTAGAAGGAGGATATTTTAGATGTTTA 13862 || || ||| ||| || ||| ||||||| || | | ||| ||||| Sbjct 71388 GCTTCAGA---AATTATTTCAACAATACGCTCATTACTTGGTTTTTGTATTAAATGTTGG 71332 Query 13863 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 13922 || || ||||| || || ||||||||||| |||||||||| ||| ||||| || ||| Sbjct 71331 AACATCAAACATGCGAAGTCACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAA 71272 Query 13923 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA--TGACC 13980 ||||| || |||||||| || || ||||| || | ||| || || | |||||| || | Sbjct 71271 AATGTCAAGCCTGGCATTAAACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCA 71212 Query 13981 CGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTT 14040 | ||| | |||| || ||||| |||||||| || |||| ||||| ||||| || Sbjct 71211 CTGAAGAAAATA--CCTTCAACGGCAGCAAATGCAATTACACGTTCACCAAAGTTGGCCG 71154 Query 14041 TTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTT 14100 || || ||||| ||||| || | || || | | |||||| | Sbjct 71153 ACTTCGAAGAAATCCAAGCAAGCGCCCAATCTGCCTTACGCTTTACGGCAGGCATTGTCT 71094 Query 14101 CAATAGCATTAAATAAATA-TTCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAA 14157 | |||||||| ||||| | |||||| | ||| ||| ||| ||| ||||||||||| | Sbjct 71093 CTATAGCATTGAATAAGCAATTCCTT-TGTTTCGAGTCCTT--AATATATGTATCAATTA 71037 Query 14158 GTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATC 14217 || ||||||||||||||| || | || ||||| || || ||||| ||||| ||||| | Sbjct 71036 ATATGCTATACATTTCAGAATGCACATTCTCCATCGCAATTTGAAATCCATAGAAGCAAC 70977 Query 14218 TAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATAC 14277 || || | | ||| |||||| | | || | ||| | | ||||||||| || |||| Sbjct 70976 GTGCCTCTGTCACTTGGACTTCCTGGCAGAAGCGTTCAACTACATTTTCATTCACAATAC 70917 Query 14278 CATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGA 14337 ||||| || || ||||| || || | || |||||| | | | || | || ||| Sbjct 70916 CATCAGATGCGGCGAAAAAGGCTAACACGTGGGAAATAAAATGTCGTTCATTATCAGTGA 70857 Query 14338 GTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392 | | |||||| | ||| ||||||||||||||||| || |||||||| || Sbjct 70856 GGCGTGCCCAATCATCCATATCTTTAGAAAGATCTACTTCCTCTACTGTCCAGAA 70802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479708175240400