Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq2718 253 2e-62
>seq2718
Length=1670031
Score = 253 bits (280), Expect = 2e-62
Identities = 490/715 (69%), Gaps = 16/715 (2%)
Strand=Plus/Minus
Query 13686 CCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13745
||||| || | || || | |||||| | ||| || ||||| | ||||||| | |||
Sbjct 71508 CCTAGCTCGACAAGCAAACGATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAA 71449
Query 13746 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 13805
|||||||| ||||| || || || | | ||||| ||||| | || || |||
Sbjct 71448 TTCATACCGATTAGATTCACCGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACA 71389
Query 13806 GCCTCTTTTATAATAATTGTAATAAT---CTCATTAGAAGGAGGATATTTTAGATGTTTA 13862
|| || ||| ||| || ||| ||||||| || | | ||| |||||
Sbjct 71388 GCTTCAGA---AATTATTTCAACAATACGCTCATTACTTGGTTTTTGTATTAAATGTTGG 71332
Query 13863 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 13922
|| || ||||| || || ||||||||||| |||||||||| ||| ||||| || |||
Sbjct 71331 AACATCAAACATGCGAAGTCACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAA 71272
Query 13923 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA--TGACC 13980
||||| || |||||||| || || ||||| || | ||| || || | |||||| || |
Sbjct 71271 AATGTCAAGCCTGGCATTAAACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCA 71212
Query 13981 CGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTT 14040
| ||| | |||| || ||||| |||||||| || |||| ||||| ||||| ||
Sbjct 71211 CTGAAGAAAATA--CCTTCAACGGCAGCAAATGCAATTACACGTTCACCAAAGTTGGCCG 71154
Query 14041 TTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTT 14100
|| || ||||| ||||| || | || || | | |||||| |
Sbjct 71153 ACTTCGAAGAAATCCAAGCAAGCGCCCAATCTGCCTTACGCTTTACGGCAGGCATTGTCT 71094
Query 14101 CAATAGCATTAAATAAATA-TTCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAA 14157
| |||||||| ||||| | |||||| | ||| ||| ||| ||| ||||||||||| |
Sbjct 71093 CTATAGCATTGAATAAGCAATTCCTT-TGTTTCGAGTCCTT--AATATATGTATCAATTA 71037
Query 14158 GTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATC 14217
|| ||||||||||||||| || | || ||||| || || ||||| ||||| ||||| |
Sbjct 71036 ATATGCTATACATTTCAGAATGCACATTCTCCATCGCAATTTGAAATCCATAGAAGCAAC 70977
Query 14218 TAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATAC 14277
|| || | | ||| |||||| | | || | ||| | | ||||||||| || ||||
Sbjct 70976 GTGCCTCTGTCACTTGGACTTCCTGGCAGAAGCGTTCAACTACATTTTCATTCACAATAC 70917
Query 14278 CATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGA 14337
||||| || || ||||| || || | || |||||| | | | || | || |||
Sbjct 70916 CATCAGATGCGGCGAAAAAGGCTAACACGTGGGAAATAAAATGTCGTTCATTATCAGTGA 70857
Query 14338 GTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392
| | |||||| | ||| ||||||||||||||||| || |||||||| ||
Sbjct 70856 GGCGTGCCCAATCATCCATATCTTTAGAAAGATCTACTTCCTCTACTGTCCAGAA 70802
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479708175240400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |