Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq2718 233 2e-56
>seq2718
Length=1670031
Score = 233 bits (258), Expect = 2e-56
Identities = 471/693 (68%), Gaps = 12/693 (2%)
Strand=Plus/Minus
Query 13494 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 13553
|||||| | ||| || ||||| | ||||||| | ||||||||||| ||||| || ||
Sbjct 71488 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAGATTCAC 71429
Query 13554 AGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTT 13613
|| | | |||||| ||||| | || || ||||| || ||| || |
Sbjct 71428 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGA---AATTATTTC 71372
Query 13614 AATAATG---TCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 13670
|| ||| |||||| || | | ||| ||||| || || ||||| || || ||
Sbjct 71371 AACAATACGCTCATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACATGCGAAGTC 71312
Query 13671 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13730
||||||||| |||||||||| ||| ||||| || |||||||| || |||||||| ||
Sbjct 71311 ACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCATTAA 71252
Query 13731 TCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAAC 13790
|| ||||| || | ||| || || | ||| || || ||||| || || |||||
Sbjct 71251 ACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAAATACCTTCAAC 71192
Query 13791 TGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCT 13850
|||||||| || |||| ||||| ||||| || || || |||||
Sbjct 71191 GGCAGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTTCGAAGAAATCCAAGCAAG 71132
Query 13851 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATG-TT 13909
||||| || | || || | | |||||| || || ||||||||||| ||
Sbjct 71131 CGCCCAATCTGCCTTACGCTTTACGGCAGGCATTGTCTCTATAGCATTGAATAAGCAATT 71072
Query 13910 CCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 13967
|||| | ||| ||| ||| ||| ||||||||||| | || ||||||||||||||| ||
Sbjct 71071 CCTT-TGTTTCGAGTCCTT--AATATATGTATCAATTAATATGCTATACATTTCAGAATG 71015
Query 13968 TATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC 14027
| || || || || || ||||| ||||| || || | || |||| | ||| || ||
Sbjct 71014 CACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACTTC 70955
Query 14028 CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGC 14087
| | | || | ||| | | |||||||| |||||||||||| || || ||||| ||
Sbjct 70954 CTGGCAGAAGCGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAGGC 70895
Query 14088 CAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATC 14147
|| | || |||||| | | | || | || |||| | |||||| | | |||
Sbjct 70894 TAACACGTGGGAAATAAAATGTCGTTCATTATCAGTGAGGCGTGCCCAATCATCCATATC 70835
Query 14148 CTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180
||||||||||||||||| || |||||||| ||
Sbjct 70834 TTTAGAAAGATCTACTTCCTCTACTGTCCAGAA 70802
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478569022317840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |