Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3107 551 7e-152 seq2718 259 6e-64 >seq3107 Length=1323484 Score = 551 bits (610), Expect = 7e-152 Identities = 1237/1840 (67%), Gaps = 38/1840 (2%) Strand=Plus/Plus Query 70827 TTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCAT 70886 ||||||||| | ||| |||||||| || || ||||| |||| ||| | ||||| || Sbjct 934453 TTTCGTACGCAAATAATACATGCCCGTCTTGAGACCTGCCTTCCAGCCGAAGAAATGTAT 934512 Query 70887 ACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATC 70946 | || || || |||| | || || || | ||| || || | ||||||||||||||| Sbjct 934513 AGAAGTAAGCTTACCATAGTTGGGCTCAGCCACGTGTATGTTGAACGACTGACTTTGATC 934572 Query 70947 GATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT-GATCGTCTTTTGTGGAATTTCCCAAA 71005 |||||| || || | |||||||||||||| || ||| || || | ||| ||||||| Sbjct 934573 GATGAATGCACCGCGATCTGCAGCCATTTTGATTGAT-GTTTTCACGGAAATCTCCCAAA 934631 Query 71006 TAGTTTTATAAAC-TCGCTTAATATCTTCTGGAA-GGTTTG--TATTCTGAATGGATCCA 71061 |||||| || | |||| || | | | ||| | || || |||| || ||||| || Sbjct 934632 CAGTTTTGTATAGATCGCGTA-TGTGCTGTGGTATGGATTCAATATTTTGTATGGAGCCG 934690 Query 71062 CCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACT 71121 | | | ||||| |||| || || || |||| ||| || |||||||| | | Sbjct 934691 CGACTGGTTATAATATTATTCTTCATATCATCATCCCACAAACCCAACTCGGTTAGATCG 934750 Query 71122 CTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATA 71181 | | | ||| |||| || ||||||||||| || || | || | ||| || |||||| Sbjct 934751 CGCAACAAGTGATGATTTACAACTTGAAATTCACCTGAAAGCACACGACGTGTATAAATA 934810 Query 71182 TTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTC 71241 || || || ||||| | ||||||||| || |||| |||||| || ||||| ||||| Sbjct 934811 TTGGAAGTGTATGGTTCAAATGACTCATTGTTGCCCATAATTTGTGCTGTTGAAGCAGTT 934870 Query 71242 GGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGA 71301 ||||| || || | || || | || | | ||||||| ||||| || || | Sbjct 934871 GGCATGGGCGCAAGCAGTAAAGAGTTGCGGACACCATGTTGCTTTATTTTCTCCTTCA-- 934928 Query 71302 GATTC---CCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATG 71358 |||| ||||||||||||||| | |||| || Sbjct 934929 -ATTCGGTCCAATTCCAAAGATCAGTTGGTGTTTTATCCCACATGTCATACTGTAGAATA 934987 Query 71359 CCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCA 71418 || |||||| || ||| ||| | || || || || || || ||||||||||| ||| Sbjct 934988 CCCTTACTAACGGGTGAACCTTCGTAAGTTTCATAGGGGCCAAGTTTTTCGGCTAATTCG 935047 Query 71419 CAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGT 71478 ||||| || || || || ||||| ||||| |||||||| || | || ||| | | | | Sbjct 935048 CAACTAGCTTCCAAGGCGCCATAGTAAATTGTTTCGAATATTTGCTGATTCAAAAGTAAT 935107 Query 71479 GCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACG 71538 ||||| || || |||||||| | | ||| || ||||| || || || || || Sbjct 935108 GCTTCTTCACTTTCGTATGGATAACGCATTAAAATTAAAGCGTCAGCAAAACCCTGTACT 935167 Query 71539 CCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCA--GCTTCTGGAATAGGATAAT 71596 ||||||||||| || | ||||| ||| || |||| || || || | ||||||| Sbjct 935168 CCAATACCGATGGGACGATGTCTGAAATTCGA--TTTCCTTGCCTCCGGTAAGGGATAAT 935225 Query 71597 AATTAATATCTATAATTTTATTGAGATTTCTGACTATTAC---TTTGACCACATCCTTTA 71653 |||||| ||||| |||||||| | ||| | | | || |||| || || || | Sbjct 935226 GATTAATGTCTATTATTTTATTCAAATTACG---TGTAACGGTTTTGGTGACCTCTTTGA 935282 Query 71654 GTTTGAGAAAATCAAATCTCCCATC---TATTACAAACACGTTCAAGGCAACAGATGCCA 71710 | ||| || | | || | | ||||||| ||||| || | || |||| Sbjct 935283 GGCGCTTAAAGTCGTACGTTTTTTCGGGTGTGACAAACATATTCAACGCGATTGAAGCCA 935342 Query 71711 GATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTAC 71770 || || || |||||||||| || | | ||||| | |||||| || || | ||||| Sbjct 935343 AGTTGCACACAGCTACCTCATCAGGTGCTGAATATTCCACAATTTCGGTACATAAATTAC 935402 Query 71771 TACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 71830 ||||||| || || || | ||| ||||||||||||||| ||||| ||||| ||||| | Sbjct 935403 TACACTTAATTGTACCAACATTCTGTTGATTACTCTTTCGATTACAAGCATCTTTATACA 935462 Query 71831 GAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GA 71889 || | || || || || || | || ||||| ||||| ||| | | |||| | Sbjct 935463 ACATGTATGGTGTGCCGGTCTCCACTTGCGATTCAATAAT-GCTAAACCAAAGACTTTGT 935521 Query 71890 GCCTTTATTATATTCTT-GTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAA 71948 || |||| | | || || | | || || || || | |||| ||||||| |||||| Sbjct 935522 GCTTTTACTTTCTTATTAGCACGTCCTTCCTGTT-CATATTTCAGATATAATTTTTCGAA 935580 Query 71949 CTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTC 72008 ||| || ||||| | | | || || ||||| | | |||||||| | ||||| || Sbjct 935581 CTCTTCACCCCATACTTCATGTAGACCGGGACACTTGTGTGGACACATTAGCGACCAGTC 935640 Query 72009 TCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATC 72068 | ||| | | ||| ||||||||||| |||||||| ||||| | ||| ||| | ||| Sbjct 935641 TTCATTGGCTTCTACACGTTTCATAAATAGATCAGGTATCCACAAAGCATAAAACAAATC 935700 Query 72069 TCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATC 72128 ||||| | |||||| || || || || || || || | ||| | || | |||||| Sbjct 935701 TCTGGCGCGATGCTCTTCTTTCCCAGTGTTTTTCTTCAAATCCAAAAATTGGAAAATATC 935760 Query 72129 AGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATC 72188 || |||||| ||||||| ||| ||||| | | || || ||||| || || ||||| Sbjct 935761 AGCATGCCATGGTTCCAGGTAGATGGCAAATGCGCCTGGACGTTTACCGCCACCTTGATC 935820 Query 72189 TATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACC 72248 | || | || ||||| | |||| |||||| || | | ||| || |||| || Sbjct 935821 CACATAGCGTGCTACATTATTGAACACTCGCAACATAGGCACCAAACCGTTTGATGTGCC 935880 Query 72249 ATTGGT-CCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTAT 72305 ||| || |||| | | || | || | ||||| || | || || | |||| || Sbjct 935881 ATTTGTACCCGCAATTGCAG-TGCCTTTTGCACGTATGCAATGTACGTTCA--GACCAAT 935937 Query 72306 TCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG-TATCATAGATGCCCTCTA 72364 ||||| || ||| || || ||||| ||| | | | || | | | | || || || | Sbjct 935938 ACCCCCAGCAGATTTGGAAATCAATGCACATTGATGTGCCGATGTGAAA-ATCCCATCAA 935996 Query 72365 TACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCG 72424 | ||| |||| |||| | |||||||| || |||| ||| | | | || | | Sbjct 935997 TGGAATCGTCCACCATGGTCAGTAGAAAGCATGATGACAATTGCGGCTGCTTGGTGGCAG 936056 Query 72425 CATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCT 72484 || |||| || |||||||| |||||||| | ||| || || | ||||| || | Sbjct 936057 CAGCGAATAGCGTTGGAGAAGCATGCGTAAAATAACGTTCGGAAAGCAAGTTGTATGTTT 936116 Query 72485 CAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCT 72544 | || |||| ||||| || |||||| || | || ||||||||||||||||||| Sbjct 936117 CGATTGCTGCATCTATGTCTTCGCCATGTATACCGATGGCAACACGCATTAACATATGCT 936176 Query 72545 GAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAA 72604 | |||| ||||| || ||| ||||| ||| | ||| ||||| ||| | |||||||| Sbjct 936177 GTGGTCGCTCAACAATTTTGCCATTTAATTTTAGCAAATAGGAACGTTCAAGAGTTTTAA 936236 Query 72605 AACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 |||||||||| || || ||| || || || |||||||| Sbjct 936237 AACCAAAATAATTATAACCAAAATCGCGGTCATAAATAAT 936276 >seq2718 Length=1670031 Score = 259 bits (286), Expect = 6e-64 Identities = 391/554 (71%), Gaps = 3/554 (1%) Strand=Plus/Minus Query 42046 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAA 42105 |||||||| ||||||||||||||||| || || || || |||||||||| ||||| Sbjct 71341 TAAATGTTGGAACATCAAACATGCGAAGTCACAATGAAGTCCCTCATCTCGTGAAATTAG 71282 Query 42106 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGC 42165 ||| |||||||| || | || ||||||| ||||| || |||||||| || || || || Sbjct 71281 TTCATTGGAAAATGTCAAGCCTGGCATTAAACCACGTTTCTTAAGCCAGAAGATCGAAGC 71222 Query 42166 AAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA 42225 ||| ||| ||||| || ||||| || || ||||| ||||| | | || ||| | Sbjct 71221 AAAACTGCCACTGAAGAAAATACCTTCAACGGCAGCAAATGCAATTACACGTTCACCAAA 71162 Query 42226 ACCGGC--ACTGTCATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 42282 ||| ||| | | | |||| | |||||||| ||||| ||||| ||| Sbjct 71161 GTTGGCCGACTTCGAAGAAATCCAAGCAAGCGCCCAATCTGCCTTACGCTTTACGGCAGG 71102 Query 42283 CATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 42342 ||| || ||||| ||||| || | | || ||| || || |||| ||||||||| Sbjct 71101 CATTGTCTCTATAGCATTGAATAAGCAATTCCTTTGTTTCGAGTCCTTAATATATGTATC 71042 Query 42343 GATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 42402 || || | ||||||||||| ||||| | || || || || || |||||||| ||||| Sbjct 71041 AATTAATATGCTATACATTTCAGAATGCACATTCTCCATCGCAATTTGAAATCCATAGAA 70982 Query 42403 ACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCAC 42462 || | ||||| || || || ||||| || || |||||| ||| |||||| ||||| Sbjct 70981 GCAACGTGCCTCTGTCACTTGGACTTCCTGGCAGAAGCGTTCAACTACATTTTCATTCAC 70922 Query 42463 TATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGG 42522 || || ||| || || ||||| || || || || ||||||| | ||| | Sbjct 70921 AATACCATCAGATGCGGCGAAAAAGGCTAACACGTGGGAAATAAAATGTCGTTCATTATC 70862 Query 42523 TGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAA 42582 || | |||||||| ||||||||||| | ||||||||| ||||| ||||| || Sbjct 70861 AGTGAGGCGTGCCCAATCATCCATATCTTTAGAAAGATCTACTTCCTCTACTGTCCAGAA 70802 Query 42583 TGATGCTTCTGCCT 42596 ||||||||||||| Sbjct 70801 CGATGCTTCTGCCT 70788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671111465172560