Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq170 149 9e-31 seq314 140 5e-28 seq3107 111 2e-19 >seq170 Length=1049199 Score = 149 bits (164), Expect = 9e-31 Identities = 440/675 (65%), Gaps = 14/675 (2%) Strand=Plus/Plus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 ||||| || || ||||| || || || || || | | || ||||| ||||||||| || Sbjct 300143 TTGCGATAGAAAATGACACCAGCACGTGGTCCCCGCAATGTTTTGTGTGTTGTAGTGCTC 300202 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221 || | || ||||||||| || || || | | || | || || || || Sbjct 300203 ACCACATCGGCATACTCAAATGGTGAGGGTATTAAACCCGCTGCCACTAAACCGGCGATA 300262 Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281 ||||| |||||||| | || | || || | || || | ||||| || | Sbjct 300263 TGTGCCATATCGGCAAAAAGATATGAATCGTTTTGGTCACAGATTTTACGGAAGCGGGCA 300322 Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341 ||||| | || || | || ||| ||||||||| |||| | |||| |||| || Sbjct 300323 TAGTCAAGGCAACGTGAGTAACAAGAAACGCCGGCTATAATTACGCGAGGTCTGAAAAGT 300382 Query 127342 TTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTAC 127401 || ||| || | | | || | ||||||| || || || | |||||||| || Sbjct 300383 TTAGCATTCGCTTCCAACTTATCGTAGTCGATAAGACCTGTACTTGCGTCCACCTTATAT 300442 Query 127402 GGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA--CGTT-----GCGG-----AATCCG 127449 ||||| || || ||| | | ||||| || || | | || || | || ||| Sbjct 300443 GGCATACTCTCAAAATATATCGATGTTGCTGAAATCCTTTTATTAGCAGTCATGAAACCG 300502 Query 127450 TGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAACG 127509 || || | || || || || |||| ||| || ||||| || | | | || |||| | Sbjct 300503 TGTGTTAAATGACCGCCATCTGGCAAATCAAGACCCATTATACGATCATGGGGTTGACAA 300562 Query 127510 ATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCCC 127569 | ||||||||||||||||||| || ||||||||| || || ||||| || ||| Sbjct 300563 AGCGCAGTGTACACGGCAAAGTTAGCTGGCGAGCCCGAATAAGGCTGTACGTTTACACCC 300622 Query 127570 CATTCGGACTCG-TTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCGAT 127628 ||||| || | || | | || ||| ||| || | ||||| || |||| || Sbjct 300623 CATTCCT-CTGGATTGAGACGAAATGCTTCGAGTGCACGTTTTTGTGCAAGTCGTTCTAT 300681 Query 127629 GCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCGAGTACTT 127688 ||||||||| || || ||||||||||| || ||||| ||| | || || |||||||| Sbjct 300682 TTCATCGATAAATTCATTTCCACCATAGTACCGTTTTCCAGGCATGCCTTCGGAGTACTT 300741 Query 127689 GTTGATGAGACACGAACTCATGCATTCTCGCACCGGTAGAGTGGTAAAGTTTTCCGATGC 127748 ||| || || ||||| | |||||| || | || | ||||| ||||| || Sbjct 300742 ATTGTGCAGGCAAGAACTTAAGCATTCCAAAACAGATACGGATGTAAAATTTTCACTGGC 300801 Query 127749 GATCAACTCTAAGCC 127763 |||| |||||||| Sbjct 300802 AATCATTTCTAAGCC 300816 >seq314 Length=932230 Score = 140 bits (154), Expect = 5e-28 Identities = 285/419 (68%), Gaps = 6/419 (1%) Strand=Plus/Minus Query 70064 GAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTA 70123 || || ||||| || ||||| || || || |||||| | || | || ||||||| | Sbjct 384477 GAAGGTGATCTAGGCCCAGTTTATGGTTTTCAGTGGCGTCATTTTGGGGCCAAGTACAGA 384418 Query 70124 GACTGCGAG-ACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACAC 70182 ||||| || |||| || | | ||||| | |||||| | ||| | | |||||||| Sbjct 384417 AACTGCAAGGACAGT-TACAAAGATGAGGGTATAGATCAACTTCAGCAAGTAATTGACAC 384359 Query 70183 TCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTT 70242 | ||| | ||||||| ||| | | || |||||| | |||||||||| ||| | Sbjct 384358 TATCAGAAATAATCCAAATGATCGACGTATTATAATGTCTGCTTGGAATCCTGTCGATAT 384299 Query 70243 GCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTA--CGATGGC 70300 | |||||||| |||||||| ||||| ||| | || || |||| | || | |||| Sbjct 384298 CCCTCAAATGGCGCTACCACCTTGTCATTGTCTTGCACAATTTT--TTGTTGCCAATGGA 384241 Query 70301 AAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAAC 70360 | || || || | | || || | |||||||| ||||| | |||||||| ||||| Sbjct 384240 GAGTTATCTTGTCAATTATACCAACGCAGTGCCGATATGGGATTGGGTGTACCATTTAAT 384181 Query 70361 ATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCAC 70420 ||||| || || || | || | ||||||||||| ||||| | || | | Sbjct 384180 ATTGCCTCGTACGCTTTGCTTACCTATATGATTGCTCATATTACTGATCTCCGACCAGGG 384121 Query 70421 GAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAA 70479 || ||||| ||||| | ||||| || || || ||| ||||| || || ||||||| Sbjct 384120 GATTTCGTCCACACTTTGGGCGATGCACATGTCTATAATAATCATATTGAAGCATTAAA 384062 >seq3107 Length=1323484 Score = 111 bits (122), Expect = 2e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGT 98099 ||||| ||||| ||||||||| | || || ||| | |||||||| || | ||| Sbjct 934641 TACAAAACTGTTTGGGAGATTTCCGTGAAAACATCAATCAAAATGGCTGCAGATCGCGGT 934582 Query 98100 GTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGT 98159 | | ||| || || ||||| |||||||| | |||| || ||||||| ||| || Sbjct 934581 GCATTCATCGATCAAAGTCAGTCGTTCAACATACACGTGGCTGAGCCCAACTATGGTAAG 934522 Query 98160 ATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCTG 98219 | ||||| ||||| || | || ||||| || ||||||||||||||||| ||| || Sbjct 934521 CTTACTTCTATACATTTCTTCGGCTGGAAGGCAGGTCTCAAGACGGGCATGTATTATTTG 934462 Query 98220 AGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGA 98260 | || || | || | ||||| |||| |||||| ||||| Sbjct 934461 CGTACGAAACCAGCTGCAAATGCTATACAATTTACTGTGGA 934421 Score = 102 bits (112), Expect = 1e-16 Identities = 197/289 (68%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 96831 GTGCCAATGCTCAGAATGTACAATGCAATGT--CACGATACGTTACACAGGGCGGCAATA 96888 ||||| ||| | || ||| |||| ||||| |||| || || || || ||| || Sbjct 935862 GTGCCTATGTTGCGAGTGTTCAAT--AATGTAGCACGCTATGTGGATCAAGGTGGCGGTA 935805 Query 96889 AACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTA 96948 |||| |||||||| | ||| ||||| ||||||| ||||| || || |||| | ||| Sbjct 935804 AACGTCCAGGCGCATTTGCCATCTACCTGGAACCATGGCATGCTGATATTTTCCAATTTT 935745 Query 96949 TCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCAC 97008 | || || |||||| |||| |||||| || ||||| || ||||||||||| Sbjct 935744 TGGATTTGAAGAAAAACACTGGGAAAGAAGAGCATCGCGCCAGAGATTTGTTTTATGCTT 935685 Query 97009 TCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGT 97068 | ||| | || ||| | || ||||| || || | | | || ||||| ||||||| Sbjct 935684 TGTGGATACCTGATCTATTTATGAAACGTGTAGAAGCCAATGAAGACTGGTCGCTAATGT 935625 Query 97069 GCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGA 97117 | || || || |||||||| || ||||| |||||||| || Sbjct 935624 GTCCACACAAGTGTCCCGGTCTACATGAAGTATGGGGTGAAGAGTTCGA 935576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741028575728560