Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq603 116 2e-21
seq2605 114 8e-21
>seq603
Length=780983
Score = 116 bits (128), Expect = 2e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220
|||||||| | ||| ||||| || || || |||||||| |||| | || || ||| |||
Sbjct 745778 ACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAGAGTGCGTCCGTCTTCC 745719
Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280
| ||| || || ||| ||||||||||| || || | ||| || |||||||| || |
Sbjct 745718 AGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTCTTGA 745659
Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340
||| ||| || ||| ||| || ||| |||| ||| |||||||| || || ||
Sbjct 745658 ATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCTTG 745599
Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372
|| || | || || ||||| |||||||| ||
Sbjct 745598 CCAGTCAAGGTCTTCACGAAGATTTGCATTTT 745567
Score = 93.3 bits (102), Expect = 3e-14
Identities = 149/213 (70%), Gaps = 6/213 (3%)
Strand=Plus/Minus
Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219
||||||||| | |||||| || || ||||||||||| || |||||| | || || ||
Sbjct 747762 CACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGACAAAGTACGTCCATCCTC 747703
Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTC 33276
| |||||| || ||| || |||||||| || || | || ||||||||||| ||
Sbjct 747702 AAGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCTTTATCTTG 747643
Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336
| | | ||| || || | | ||| || || ||| | || |||| || || ||
Sbjct 747642 GATCTTAGCC---TTAACATTCTCAATGGTATCTGAGGGCTCGACTTCCAAGGTGATGGT 747586
Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
||| || || || || || ||||| ||||||||
Sbjct 747585 TTTGCCAGTGAGGGTCTTAACGAAGATTTGCAT 747553
Score = 89.7 bits (98), Expect = 3e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201
||| || | ||| || | || ||||| | || || || || || ||||| || || ||
Sbjct 746025 ACCACCACGTAAGCGTAGAACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCGGA 745966
Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261
|| || || || ||||| || || ||| || || |||||||| || || | |||
Sbjct 745965 CAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGG 745906
Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321
|| ||||| || || ||| ||| || | | ||| || ||| || | |||
Sbjct 745905 GATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAAC 745846
Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370
|||| ||| || ||||||||||| | |||||| |||||||| ||||||
Sbjct 745845 CTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCATG 745797
>seq2605
Length=276952
Score = 114 bits (126), Expect = 8e-21
Identities = 164/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202
|| ||||| | || | || ||||||||||| |||||||| || ||||| || |||| |
Sbjct 242123 CCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCC 242064
Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262
|| || | || |||||||||||||| ||| |||| ||| || || || | |||
Sbjct 242063 AATGTGCGACCATCTTCCAATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGGGGA 242004
Query 33263 ATGCCTTCTTTTTCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319
|| ||||| || || || | ||| || || || ||| || || || | |
Sbjct 242003 ATTCCTTCCTTATCTTGAATTTTGGCC---TTAACATGTTCAATAGTATCCGAAGGCTCA 241947
Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| || ||||| || || || |||||||| ||||||||||||||||||||
Sbjct 241946 ACCTCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAAAATTTGCAT 241897
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318764755852788
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |