Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq2718 179 3e-40
>seq2718
Length=1670031
Score = 179 bits (198), Expect = 3e-40
Identities = 470/707 (66%), Gaps = 14/707 (2%)
Strand=Plus/Minus
Query 12986 TCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACA 13045
||||| ||||| || || || | ||||| | || ||||| || |||| || ||
Sbjct 71487 TCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAGATTCACC 71428
Query 13046 GGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTCTT 13105
|||| ||| || ||||| || | | || || | ||| ||||| || ||| ||
Sbjct 71427 GGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTATTTCAACA 71368
Query 13106 ATTACGTTCTCTAATGGAGGATTTGA--TAGATGCTTAAACATCATACATGCAAAATCAC 13163
|| ||| || || | | | |||| || ||| | ||||||| |||||| || ||||
Sbjct 71367 AT-ACGCTCATTACTTG-GTTTTTGTATTAAATGTTGGAACATCAAACATGCGAAGTCAC 71310
Query 13164 AGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCC 13223
| || | ||| ||||||| ||||| || || |||||||| | || ||||| | |
Sbjct 71309 AATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCATTAAAC 71250
Query 13224 CTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCC--GaaaaaaaTATTCCTTCAAC 13281
| ||||| |||| ||| || || | |||||| || ||| |||||| ||||||||
Sbjct 71249 CACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAAATA--CCTTCAAC 71192
Query 13282 TGCTGCAAACGCTATCAACCTTTCACCATACGTA--CTATTTTTACTCTCTATCCACTTT 13339
|| ||||| || || | | ||||||| | | | | || | |||||
Sbjct 71191 GGCAGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTTCGAAGAA--ATCCAAGCA 71134
Query 13340 CTGGCCCAGTTTGCTTTTTGTTTAACG-CAGTTCATATTTTCTATTGCGTTAAATAAATA 13398
||||| | ||| || | || ||| ||| ||| | ||||| || || ||||| |
Sbjct 71133 AGCGCCCAATCTGCCTTACGCTTTACGGCAGG-CATTGTCTCTATAGCATTGAATAAGCA 71075
Query 13399 AtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATG 13458
||| ||| || ||| |||||| ||||| || |||| |||||||||||| |||||
Sbjct 71074 ATTCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCAGAATG 71015
Query 13459 AATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518
| ||| |||||||| ||||| || ||||| || || | ||||||| || || |||||
Sbjct 71014 CACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACTTC 70955
Query 13519 GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGC 13578
| | || | ||| ||| ||||| || || || || ||| || || ||||| ||
Sbjct 70954 CTGGCAGAAGCGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAGGC 70895
Query 13579 AAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATC 13638
| | ||| |||||| | | ||| || || | | | |||||| | |||
Sbjct 70894 TAACACGTGGGAAATAAAATGTCGTTCATTATCAGTGAGGCGTGCCCAATCATCCATATC 70835
Query 13639 TTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCT 13685
||| || | |||||| ||||| || ||||| || || || | ||||
Sbjct 70834 TTTAGAAAGATCTACTTCCTCTACTGTCCAGAACGATGCTTCTGCCT 70788
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430965034911012
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |