Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2718 179 3e-40 >seq2718 Length=1670031 Score = 179 bits (198), Expect = 3e-40 Identities = 470/707 (66%), Gaps = 14/707 (2%) Strand=Plus/Minus Query 12986 TCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACA 13045 ||||| ||||| || || || | ||||| | || ||||| || |||| || || Sbjct 71487 TCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAGATTCACC 71428 Query 13046 GGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTCTT 13105 |||| ||| || ||||| || | | || || | ||| ||||| || ||| || Sbjct 71427 GGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTATTTCAACA 71368 Query 13106 ATTACGTTCTCTAATGGAGGATTTGA--TAGATGCTTAAACATCATACATGCAAAATCAC 13163 || ||| || || | | | |||| || ||| | ||||||| |||||| || |||| Sbjct 71367 AT-ACGCTCATTACTTG-GTTTTTGTATTAAATGTTGGAACATCAAACATGCGAAGTCAC 71310 Query 13164 AGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCC 13223 | || | ||| ||||||| ||||| || || |||||||| | || ||||| | | Sbjct 71309 AATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCATTAAAC 71250 Query 13224 CTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCC--GaaaaaaaTATTCCTTCAAC 13281 | ||||| |||| ||| || || | |||||| || ||| |||||| |||||||| Sbjct 71249 CACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAAATA--CCTTCAAC 71192 Query 13282 TGCTGCAAACGCTATCAACCTTTCACCATACGTA--CTATTTTTACTCTCTATCCACTTT 13339 || ||||| || || | | ||||||| | | | | || | ||||| Sbjct 71191 GGCAGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTTCGAAGAA--ATCCAAGCA 71134 Query 13340 CTGGCCCAGTTTGCTTTTTGTTTAACG-CAGTTCATATTTTCTATTGCGTTAAATAAATA 13398 ||||| | ||| || | || ||| ||| ||| | ||||| || || ||||| | Sbjct 71133 AGCGCCCAATCTGCCTTACGCTTTACGGCAGG-CATTGTCTCTATAGCATTGAATAAGCA 71075 Query 13399 AtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATG 13458 ||| ||| || ||| |||||| ||||| || |||| |||||||||||| ||||| Sbjct 71074 ATTCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCAGAATG 71015 Query 13459 AATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 | ||| |||||||| ||||| || ||||| || || | ||||||| || || ||||| Sbjct 71014 CACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACTTC 70955 Query 13519 GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGC 13578 | | || | ||| ||| ||||| || || || || ||| || || ||||| || Sbjct 70954 CTGGCAGAAGCGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAGGC 70895 Query 13579 AAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATC 13638 | | ||| |||||| | | ||| || || | | | |||||| | ||| Sbjct 70894 TAACACGTGGGAAATAAAATGTCGTTCATTATCAGTGAGGCGTGCCCAATCATCCATATC 70835 Query 13639 TTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCT 13685 ||| || | |||||| ||||| || ||||| || || || | |||| Sbjct 70834 TTTAGAAAGATCTACTTCCTCTACTGTCCAGAACGATGCTTCTGCCT 70788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430965034911012