Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq2605 205 2e-47
seq603 165 2e-35
seq1558 132 1e-25
seq2707 109 1e-18
>seq2605
Length=276952
Score = 205 bits (226), Expect = 2e-47
Identities = 182/228 (80%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392
|| ||||| || | |||||||| ||| |||||||| ||||||||||||||||||||||
Sbjct 242123 CCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCC 242064
Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452
| || | ||| ||||| | ||| ||||| ||||||||||| | |||||||||||| ||
Sbjct 242063 AATGTGCGACCATCTTCCAATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGGGGA 242004
Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512
|||||||| ||||| ||||| || || || |||| ||| | ||||| ||| || |||
Sbjct 242003 ATTCCTTCCTTATCTTGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGCTCAACC 241944
Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
|| || || || |||||||| ||||| |||||||| || || ||||||
Sbjct 241943 TCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAAAATTTGCATT 241896
>seq603
Length=780983
Score = 165 bits (182), Expect = 2e-35
Identities = 177/234 (76%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || || | ||| | ||| || | ||| | |||||| || ||||| || || || ||
Sbjct 745799 ATGCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCG 745740
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| ||||| | |||||||| |||||||| || ||||| |||| | |||||||| ||
Sbjct 745739 GACAGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGG 745680
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| ||||||||||| || |||||||| ||||| |||||||| | |||||| |||||
Sbjct 745679 GGGATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCA 745620
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
||||| || || || ||||| ||||| | || || || || || |||||||||
Sbjct 745619 ACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTTG 745566
Score = 143 bits (158), Expect = 6e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| |||| ||||| || ||||| ||||||||||||||||| || || || | || ||
Sbjct 746009 AGAACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCGGACAGTGTGCGTCCATCC 745950
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| | ||||| ||||| ||||| | | |||||||| || || |||||||| |||||
Sbjct 745949 TCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCT 745890
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
||||| || ||||| ||||| || | ||||||| ||| || ||||| | || || ||
Sbjct 745889 TGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTT 745830
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || || | ||||| || || ||||||||
Sbjct 745829 TTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 745798
Score = 116 bits (128), Expect = 9e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || | ||| | ||| ||||| ||||| ||||| ||||| || | ||| | || ||
Sbjct 747764 AGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGACAAAGTACGTCCATCC 747705
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| ||||| || || |||||||| | | |||||||| || || || |||||||||||
Sbjct 747704 TCAAGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCTTTATCT 747645
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
|| ||||| || || ||||| || | |||||| || || || || | || || ||
Sbjct 747644 TGGATCTTAGCCTTAACATTCTCAATGGTATCTGAGGGCTCGACTTCCAAGGTGATGGTT 747585
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| ||||| || || || || || || |||||
Sbjct 747584 TTGCCAGTGAGGGTCTTAACGAAGATTTGCAT 747553
>seq1558
Length=2163639
Score = 132 bits (146), Expect = 1e-25
Identities = 150/201 (75%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || || || || || ||||| || | || | ||| ||||| | ||| |||||
Sbjct 2034144 GTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCCAATTGCTTTCCG 2034085
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || | | ||||||||| || || || || |||||||| || || || |||||
Sbjct 2034084 GCGAAGATCAAACGCTGTTGATCTGGGGGGATGCCCTCTTTATCTTGGATTTTAGCTTTG 2034025
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|||||||| | ||| || ||| || ||||||| ||||| ||||||||||| | |||
Sbjct 2034024 ACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTAATGGTCTTACCAGTTAAGGTT 2033965
Query 104543 TTTACAAATATCTGCATTTTG 104563
|| || || ||||||||||||
Sbjct 2033964 TTGACGAAAATCTGCATTTTG 2033944
>seq2707
Length=1765650
Score = 109 bits (120), Expect = 1e-18
Identities = 235/346 (68%), Gaps = 4/346 (1%)
Strand=Plus/Plus
Query 238426 TAAGACGTGAACTAGCTGATAATTTTTGCTATTATAATAAAAGATATGATTCTATAGAAT 238485
||||||||||| |||| |||||||| || ||||||||| || || || | || ||
Sbjct 1303070 TAAGACGTGAATTAGCGGATAATTTCTGTTATTATAATGAACATTACGACAGTCTAAAAG 1303129
Query 238486 CCACACATTCATGGGCACGAGAAACATTAGAAGCACA-CGTAAATGATAGAAGAAAATAT 238544
|||| | |||||| |||| ||||||| || |||||| |||| | | |
Sbjct 1303130 GATTACATGCTTGGGCAGCTAAAACCTTAGAAGACCATCGTAAA-GATAAGCGCTCACCT 1303188
Query 238545 ATTTACTCTTTAAAACAGCTCGAGAGAGCCGAAACTCACGATCCCCTATGGAATTCCGCC 238604
|||| | || || | ||| ||| || |||||| ||||||||| | ||
Sbjct 1303189 GCTTACACGTTGGTCGAGTTTGAGCAAGCTCGTACCCACGATGACCTATGGAACGCAGCG 1303248
Query 238605 CAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTAAA 238664
||| | || || || ||||||||||||| |||| | || ||||||||||| |||
Sbjct 1303249 CAGCTGCAGTTGTTACATGAAGGCAAAATGCATGGTTTTCTGCGTATGTATTGGGCAAAA 1303308
Query 238665 AAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGATATAG-TATTTATCTGAA 238723
|||||||| || ||| || | || | | ||| ||||| | || |||| | ||||
Sbjct 1303309 AAGATACTGGAGTGGTCTTCTACGCCTGATGCTGCT-TTAGAAACAGCAATTTTTTTGAA 1303367
Query 238724 CGATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTAGGT 238769
||||||||| | || ||| ||||| |||||||| || |||
Sbjct 1303368 TGATAAATACAGTTTAGATGGTTTAGATCCAAACGGATATGTTGGT 1303413
Score = 93.3 bits (102), Expect = 1e-13
Identities = 118/157 (75%), Gaps = 4/157 (3%)
Strand=Plus/Plus
Query 238578 ACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCAT 238637
|| || ||| ||| |||||| | || || |||||| |||| | ||||||||||||
Sbjct 1307090 ACACATGATGACCTCTGGAATGCTGCTCAAATACAACTGGTTCGTGAAGGCAAAATGCAC 1307149
Query 238638 AG-TTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGA 238696
| |||||| || | ||||||||||||||||||||| |||||| | | || ||| | ||
Sbjct 1307150 GGATTTCTT-CGTAAGTATTGGGCTAAAAAGATACTGGAATGGTCCAACTCACCAGAAGA 1307208
Query 238697 AGCTCTTAGATATAG-TATTTATCTGAACGATAAATA 238732
|| | |||| || | |||||| | ||||| |||||
Sbjct 1307209 GGCGC-TAGAAATTGCAATTTATTTAAACGACAAATA 1307244
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151349628922648
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |