Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2605 205 2e-47 seq603 165 2e-35 seq1558 132 1e-25 seq2707 109 1e-18 >seq2605 Length=276952 Score = 205 bits (226), Expect = 2e-47 Identities = 182/228 (80%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || | |||||||| ||| |||||||| |||||||||||||||||||||| Sbjct 242123 CCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCC 242064 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | || | ||| ||||| | ||| ||||| ||||||||||| | |||||||||||| || Sbjct 242063 AATGTGCGACCATCTTCCAATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGGGGA 242004 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 |||||||| ||||| ||||| || || || |||| ||| | ||||| ||| || ||| Sbjct 242003 ATTCCTTCCTTATCTTGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGCTCAACC 241944 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || |||||||| ||||| |||||||| || || |||||| Sbjct 241943 TCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAAAATTTGCATT 241896 >seq603 Length=780983 Score = 165 bits (182), Expect = 2e-35 Identities = 177/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || | ||| | ||| || | ||| | |||||| || ||||| || || || || Sbjct 745799 ATGCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCG 745740 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | |||||||| |||||||| || ||||| |||| | |||||||| || Sbjct 745739 GACAGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGG 745680 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||| || |||||||| ||||| |||||||| | |||||| ||||| Sbjct 745679 GGGATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCA 745620 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || || || ||||| ||||| | || || || || || ||||||||| Sbjct 745619 ACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTTG 745566 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || |||| ||||| || ||||| ||||||||||||||||| || || || | || || Sbjct 746009 AGAACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCGGACAGTGTGCGTCCATCC 745950 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | ||||| ||||| ||||| | | |||||||| || || |||||||| ||||| Sbjct 745949 TCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCT 745890 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || ||||| ||||| || | ||||||| ||| || ||||| | || || || Sbjct 745889 TGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTT 745830 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || | ||||| || || |||||||| Sbjct 745829 TTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 745798 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| | ||| ||||| ||||| ||||| ||||| || | ||| | || || Sbjct 747764 AGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGACAAAGTACGTCCATCC 747705 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || ||||| || || |||||||| | | |||||||| || || || ||||||||||| Sbjct 747704 TCAAGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCTTTATCT 747645 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || ||||| || | |||||| || || || || | || || || Sbjct 747644 TGGATCTTAGCCTTAACATTCTCAATGGTATCTGAGGGCTCGACTTCCAAGGTGATGGTT 747585 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || || || ||||| Sbjct 747584 TTGCCAGTGAGGGTCTTAACGAAGATTTGCAT 747553 >seq1558 Length=2163639 Score = 132 bits (146), Expect = 1e-25 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || || || || ||||| || | || | ||| ||||| | ||| ||||| Sbjct 2034144 GTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCCAATTGCTTTCCG 2034085 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||||||||| || || || || |||||||| || || || ||||| Sbjct 2034084 GCGAAGATCAAACGCTGTTGATCTGGGGGGATGCCCTCTTTATCTTGGATTTTAGCTTTG 2034025 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||| || ||| || ||||||| ||||| ||||||||||| | ||| Sbjct 2034024 ACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTAATGGTCTTACCAGTTAAGGTT 2033965 Query 104543 TTTACAAATATCTGCATTTTG 104563 || || || |||||||||||| Sbjct 2033964 TTGACGAAAATCTGCATTTTG 2033944 >seq2707 Length=1765650 Score = 109 bits (120), Expect = 1e-18 Identities = 235/346 (68%), Gaps = 4/346 (1%) Strand=Plus/Plus Query 238426 TAAGACGTGAACTAGCTGATAATTTTTGCTATTATAATAAAAGATATGATTCTATAGAAT 238485 ||||||||||| |||| |||||||| || ||||||||| || || || | || || Sbjct 1303070 TAAGACGTGAATTAGCGGATAATTTCTGTTATTATAATGAACATTACGACAGTCTAAAAG 1303129 Query 238486 CCACACATTCATGGGCACGAGAAACATTAGAAGCACA-CGTAAATGATAGAAGAAAATAT 238544 |||| | |||||| |||| ||||||| || |||||| |||| | | | Sbjct 1303130 GATTACATGCTTGGGCAGCTAAAACCTTAGAAGACCATCGTAAA-GATAAGCGCTCACCT 1303188 Query 238545 ATTTACTCTTTAAAACAGCTCGAGAGAGCCGAAACTCACGATCCCCTATGGAATTCCGCC 238604 |||| | || || | ||| ||| || |||||| ||||||||| | || Sbjct 1303189 GCTTACACGTTGGTCGAGTTTGAGCAAGCTCGTACCCACGATGACCTATGGAACGCAGCG 1303248 Query 238605 CAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTAAA 238664 ||| | || || || ||||||||||||| |||| | || ||||||||||| ||| Sbjct 1303249 CAGCTGCAGTTGTTACATGAAGGCAAAATGCATGGTTTTCTGCGTATGTATTGGGCAAAA 1303308 Query 238665 AAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGATATAG-TATTTATCTGAA 238723 |||||||| || ||| || | || | | ||| ||||| | || |||| | |||| Sbjct 1303309 AAGATACTGGAGTGGTCTTCTACGCCTGATGCTGCT-TTAGAAACAGCAATTTTTTTGAA 1303367 Query 238724 CGATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTAGGT 238769 ||||||||| | || ||| ||||| |||||||| || ||| Sbjct 1303368 TGATAAATACAGTTTAGATGGTTTAGATCCAAACGGATATGTTGGT 1303413 Score = 93.3 bits (102), Expect = 1e-13 Identities = 118/157 (75%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 238578 ACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCAT 238637 || || ||| ||| |||||| | || || |||||| |||| | |||||||||||| Sbjct 1307090 ACACATGATGACCTCTGGAATGCTGCTCAAATACAACTGGTTCGTGAAGGCAAAATGCAC 1307149 Query 238638 AG-TTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGA 238696 | |||||| || | ||||||||||||||||||||| |||||| | | || ||| | || Sbjct 1307150 GGATTTCTT-CGTAAGTATTGGGCTAAAAAGATACTGGAATGGTCCAACTCACCAGAAGA 1307208 Query 238697 AGCTCTTAGATATAG-TATTTATCTGAACGATAAATA 238732 || | |||| || | |||||| | ||||| ||||| Sbjct 1307209 GGCGC-TAGAAATTGCAATTTATTTAAACGACAAATA 1307244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151349628922648