Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_005902.1
Length=186250
Score E
Sequences producing significant alignments: (Bits) Value
seq314 183 4e-41
seq669 82.4 9e-11
>seq314
Length=932230
Score = 183 bits (202), Expect = 4e-41
Identities = 310/442 (70%), Gaps = 14/442 (3%)
Strand=Plus/Plus
Query 6801 TCGAGTTAATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAG 6860
||| ||||| |||||||||| |||| ||||||| ||| | ||| ||||| || |
Sbjct 384046 TCGCGTTAACTGTTCTTTTAATGCTTCAATATGATTATTATAGACATGTGCATCGCCCAA 384105
Query 6861 CGTATGAATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAA 6920
|| || | || || |||||| | |||| | |||||||| | ||| || | ||
Sbjct 384106 AGTGTGGACGAAATCCCCTGGTCGGAGATCAGTAATATGAGCAATCATATAGGTAAGCAA 384165
Query 6921 TGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACA 6980
|| || || || | |||||| |||||||| ||||||||||| || | ||| || |
Sbjct 384166 AGCGTACGAGGCAATATTAAATGGTACACCCAATCCCATATCGGCACTGCGTTGGTATAA 384225
Query 6981 TTGACAAGATAA---AATATTGTCTATAGCATAAAATTGACACAATAC-ATGACATGGAG 7036
|||||||||||| |||| | | || ||||||| ||| || |||||| || |
Sbjct 384226 TTGACAAGATAACTCTCCATTGGC---AACAAAAAATTG-TGCAAGACAATGACAAGGTG 384281
Query 7037 GTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCAT 7096
||| | ||| ||||| ||||||||||||| ||||| |||||||| |||||
Sbjct 384282 GTAGCGCCATTTGAGGGATATCGACAGGATTCCAAGCAGACATTATAATACGTCGATCAT 384341
Query 7097 TTGGATTTGTTTTTAATTTTGTTATAATTATT---TGTAATTGATCTATACCCTGACCTT 7153
||||| || ||| | || ||| ||||| | || | |||||||||||||| | |||
Sbjct 384342 TTGGA-TTATTTCTGATAGTGT--CAATTACTTGCTGAAGTTGATCTATACCCTCATCTT 384398
Query 7154 CATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAA 7213
||| | | || ||| | || || || |||||||| | ||| ||||| |||||||
Sbjct 384399 TGTAACTGTCCTTGCAGTTTCTGTACTTGGCCCCAAAATGACGCCACTGAAAACCATAAA 384458
Query 7214 TAGGACCTAAATCACCTTCTTC 7235
|| |||| ||||||||| ||
Sbjct 384459 CTGGGCCTAGATCACCTTCCTC 384480
>seq669
Length=2794457
Score = 82.4 bits (90), Expect = 9e-11
Identities = 140/200 (70%), Gaps = 6/200 (3%)
Strand=Plus/Minus
Query 164503 GGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTA 164562
||||| ||||| | ||||| || | | |||| || |||||| ||||||||| |
Sbjct 432281 GGCTGCAAACACGTTAAAGGCATACTCCTGTATGGCCCACCTGGTACCGGTAAAACGCTG 432222
Query 164563 ATGGCTCGATGCATTGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTTAATGGT 164619
||||| || |||| | | | |||||| ||||| ||| ||||||||||||||
Sbjct 432221 ATGGCGCGTCAAATTGGT-ACTATGTTAAATGCGCGCGAGCCG--AAAATTGTTAATGGC 432165
Query 164620 CCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAG 164679
|| || | ||| ||||||| ||||| || ||||| |||||| | || | ||
Sbjct 432164 CCACAAATTTTGGACAAATACGTAGGCGAATCAGAGGCTAATATACGACGTCTCTTCGCC 432105
Query 164680 GAGGCTGAAGAAGAACAAAA 164699
|||||||| ||||| ||||
Sbjct 432104 GAGGCTGAGGAAGAGGAAAA 432085
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595847375589600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |