Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq314 183 4e-41 seq669 82.4 9e-11 >seq314 Length=932230 Score = 183 bits (202), Expect = 4e-41 Identities = 310/442 (70%), Gaps = 14/442 (3%) Strand=Plus/Plus Query 6801 TCGAGTTAATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAG 6860 ||| ||||| |||||||||| |||| ||||||| ||| | ||| ||||| || | Sbjct 384046 TCGCGTTAACTGTTCTTTTAATGCTTCAATATGATTATTATAGACATGTGCATCGCCCAA 384105 Query 6861 CGTATGAATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAA 6920 || || | || || |||||| | |||| | |||||||| | ||| || | || Sbjct 384106 AGTGTGGACGAAATCCCCTGGTCGGAGATCAGTAATATGAGCAATCATATAGGTAAGCAA 384165 Query 6921 TGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACA 6980 || || || || | |||||| |||||||| ||||||||||| || | ||| || | Sbjct 384166 AGCGTACGAGGCAATATTAAATGGTACACCCAATCCCATATCGGCACTGCGTTGGTATAA 384225 Query 6981 TTGACAAGATAA---AATATTGTCTATAGCATAAAATTGACACAATAC-ATGACATGGAG 7036 |||||||||||| |||| | | || ||||||| ||| || |||||| || | Sbjct 384226 TTGACAAGATAACTCTCCATTGGC---AACAAAAAATTG-TGCAAGACAATGACAAGGTG 384281 Query 7037 GTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCAT 7096 ||| | ||| ||||| ||||||||||||| ||||| |||||||| ||||| Sbjct 384282 GTAGCGCCATTTGAGGGATATCGACAGGATTCCAAGCAGACATTATAATACGTCGATCAT 384341 Query 7097 TTGGATTTGTTTTTAATTTTGTTATAATTATT---TGTAATTGATCTATACCCTGACCTT 7153 ||||| || ||| | || ||| ||||| | || | |||||||||||||| | ||| Sbjct 384342 TTGGA-TTATTTCTGATAGTGT--CAATTACTTGCTGAAGTTGATCTATACCCTCATCTT 384398 Query 7154 CATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAA 7213 ||| | | || ||| | || || || |||||||| | ||| ||||| ||||||| Sbjct 384399 TGTAACTGTCCTTGCAGTTTCTGTACTTGGCCCCAAAATGACGCCACTGAAAACCATAAA 384458 Query 7214 TAGGACCTAAATCACCTTCTTC 7235 || |||| ||||||||| || Sbjct 384459 CTGGGCCTAGATCACCTTCCTC 384480 >seq669 Length=2794457 Score = 82.4 bits (90), Expect = 9e-11 Identities = 140/200 (70%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 164503 GGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTA 164562 ||||| ||||| | ||||| || | | |||| || |||||| ||||||||| | Sbjct 432281 GGCTGCAAACACGTTAAAGGCATACTCCTGTATGGCCCACCTGGTACCGGTAAAACGCTG 432222 Query 164563 ATGGCTCGATGCATTGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTTAATGGT 164619 ||||| || |||| | | | |||||| ||||| ||| |||||||||||||| Sbjct 432221 ATGGCGCGTCAAATTGGT-ACTATGTTAAATGCGCGCGAGCCG--AAAATTGTTAATGGC 432165 Query 164620 CCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAG 164679 || || | ||| ||||||| ||||| || ||||| |||||| | || | || Sbjct 432164 CCACAAATTTTGGACAAATACGTAGGCGAATCAGAGGCTAATATACGACGTCTCTTCGCC 432105 Query 164680 GAGGCTGAAGAAGAACAAAA 164699 |||||||| ||||| |||| Sbjct 432104 GAGGCTGAGGAAGAGGAAAA 432085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595847375589600