Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1581 120 2e-22 seq1337 118 6e-22 seq2447 116 2e-21 seq1114 113 2e-20 seq1036 113 2e-20 seq2685 82.4 4e-11 >seq1581 Length=462264 Score = 120 bits (132), Expect = 2e-22 Identities = 87/101 (86%), Gaps = 3/101 (3%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||||||| || | || |||| | | |||||||||| |||||||||| ||||||||| Sbjct 191179 AAATATATAA---AAAAGAAATTATACTGGCCCATGAGGGGATCGAACCCGCGACCTTCG 191235 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| |||||||||||||||||||| Sbjct 191236 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 191276 Score = 114 bits (126), Expect = 7e-21 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || |||||||||| |||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 195496 AAATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 195437 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||||||||| Sbjct 195436 AACTGAGCTAATGGGCC 195420 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 274016 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 273957 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 273956 TGAGCTAATGGGCC 273943 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 276571 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 276512 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 276511 TGAGCTAATGGGCC 276498 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 279964 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 279905 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 279904 TGAGCTAATGGGCC 279891 >seq1337 Length=514676 Score = 118 bits (130), Expect = 6e-22 Identities = 79/89 (89%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||| | | | |||||||||| |||||||||| ||||||||||||||||||||| Sbjct 10222 AACAAAAATTTATAATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 10163 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 10162 GACGCTCTAACCAACTGAGCTAATGGGCC 10134 Score = 116 bits (128), Expect = 2e-21 Identities = 72/78 (92%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || ||||||||||| |||||||||| ||||||||||||||||||||||||||||| || Sbjct 7419 AACTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 7360 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 7359 CAACTGAGCTAATGGGCC 7342 >seq2447 Length=2049459 Score = 116 bits (128), Expect = 2e-21 Identities = 85/97 (88%), Gaps = 3/97 (3%) Strand=Plus/Minus Query 11437 AATT-AATAAAAAATCAAATTG--GCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 |||| ||| |||||| | ||| |||||||| |||||||||| |||||||||||||| Sbjct 1109666 AATTCAATTAAAAATGTATTTGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTA 1109607 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||| ||||||||||||||||||||| Sbjct 1109606 TTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 1109570 >seq1114 Length=2326579 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1887613 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1887672 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 1887673 TGAGCTAATGGGCC 1887686 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1894187 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1894246 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 1894247 TGAGCTAATGGGCC 1894260 >seq1036 Length=602045 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 264927 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 264986 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 264987 TGAGCTAATGGGCC 265000 >seq2685 Length=1747149 Score = 82.4 bits (90), Expect = 4e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| |||| | |||||| | ||||| ||||||||||||||||||||||| |||||| Sbjct 1514973 TGGCGAATGAGGGAATCGAAACCGCGACCGTCGCGTTATTAGCACGACGCTCTAACCAAC 1515032 Query 11516 TGAGCTAATGGGCC 11529 ||| |||| ||||| Sbjct 1515033 TGAACTAAGGGGCC 1515046 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261480664029256