Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq1581 120 2e-22
seq1337 118 6e-22
seq2447 116 2e-21
seq1114 113 2e-20
seq1036 113 2e-20
seq2685 82.4 4e-11
>seq1581
Length=462264
Score = 120 bits (132), Expect = 2e-22
Identities = 87/101 (86%), Gaps = 3/101 (3%)
Strand=Plus/Plus
Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488
||||||| || | || |||| | | |||||||||| |||||||||| |||||||||
Sbjct 191179 AAATATATAA---AAAAGAAATTATACTGGCCCATGAGGGGATCGAACCCGCGACCTTCG 191235
Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||||||||||| ||||||||||||||||||||
Sbjct 191236 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 191276
Score = 114 bits (126), Expect = 7e-21
Identities = 71/77 (92%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512
|| |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 195496 AAATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 195437
Query 11513 AACTGAGCTAATGGGCC 11529
|||||||||||||||||
Sbjct 195436 AACTGAGCTAATGGGCC 195420
Score = 113 bits (124), Expect = 2e-20
Identities = 69/74 (93%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 274016 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 273957
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 273956 TGAGCTAATGGGCC 273943
Score = 113 bits (124), Expect = 2e-20
Identities = 69/74 (93%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 276571 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 276512
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 276511 TGAGCTAATGGGCC 276498
Score = 113 bits (124), Expect = 2e-20
Identities = 69/74 (93%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 279964 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 279905
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 279904 TGAGCTAATGGGCC 279891
>seq1337
Length=514676
Score = 118 bits (130), Expect = 6e-22
Identities = 79/89 (89%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| ||||| | | | |||||||||| |||||||||| |||||||||||||||||||||
Sbjct 10222 AACAAAAATTTATAATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 10163
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| ||||||||||||||||||||
Sbjct 10162 GACGCTCTAACCAACTGAGCTAATGGGCC 10134
Score = 116 bits (128), Expect = 2e-21
Identities = 72/78 (92%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
|| ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 7419 AACTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 7360
Query 11512 CAACTGAGCTAATGGGCC 11529
||||||||||||||||||
Sbjct 7359 CAACTGAGCTAATGGGCC 7342
>seq2447
Length=2049459
Score = 116 bits (128), Expect = 2e-21
Identities = 85/97 (88%), Gaps = 3/97 (3%)
Strand=Plus/Minus
Query 11437 AATT-AATAAAAAATCAAATTG--GCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493
|||| ||| |||||| | ||| |||||||| |||||||||| ||||||||||||||
Sbjct 1109666 AATTCAATTAAAAATGTATTTGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTA 1109607
Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530
||||||||||||||| |||||||||||||||||||||
Sbjct 1109606 TTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 1109570
>seq1114
Length=2326579
Score = 113 bits (124), Expect = 2e-20
Identities = 69/74 (93%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1887613 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1887672
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 1887673 TGAGCTAATGGGCC 1887686
Score = 113 bits (124), Expect = 2e-20
Identities = 69/74 (93%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1894187 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1894246
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 1894247 TGAGCTAATGGGCC 1894260
>seq1036
Length=602045
Score = 113 bits (124), Expect = 2e-20
Identities = 69/74 (93%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 264927 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 264986
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 264987 TGAGCTAATGGGCC 265000
>seq2685
Length=1747149
Score = 82.4 bits (90), Expect = 4e-11
Identities = 62/74 (84%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||| |||| | |||||| | ||||| ||||||||||||||||||||||| ||||||
Sbjct 1514973 TGGCGAATGAGGGAATCGAAACCGCGACCGTCGCGTTATTAGCACGACGCTCTAACCAAC 1515032
Query 11516 TGAGCTAATGGGCC 11529
||| |||| |||||
Sbjct 1515033 TGAACTAAGGGGCC 1515046
Lambda K H
0.638 0.410 0.920
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261480664029256
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |