Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq294 111 2e-20 seq2774 107 3e-19 seq2937 104 4e-18 >seq294 Length=36877 Score = 111 bits (122), Expect = 2e-20 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||||||||| | | | | || ||||||||||| |||||||| ||||| ||||| Sbjct 35789 GCTAAGCGTCATCGTAAAGTTTTCCGTGATAACATCCAGGGAATCACTAAGCCTGCTATT 35848 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| |||||||||||| ||||| || ||| | ||||| ||| | | |||||| || Sbjct 35849 CGACGTTTGGCTCGTCGTGAAGGAGTAAAACGTATATCTGGGTTGATATGTGAAGAAATC 35908 Query 16553 CGTG 16556 |||| Sbjct 35909 CGTG 35912 >seq2774 Length=1624295 Score = 107 bits (118), Expect = 3e-19 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| || |||||||| || || || || ||| |||||||||||||| Sbjct 844095 CTACGTGATAACATCCAGGGTATCACCAAACCGGCCATTCGCCGTTTGGCTCGTCGTGGT 844154 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 || || || ||| | ||||||||| | |||||||| | |||| ||| |||||| Sbjct 844155 GGTGTAAAACGTATTTCTGGATTGATTTATGAAGAAACACGTGGTGTATTGAAG 844208 Score = 87.8 bits (96), Expect = 3e-13 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 16582 CGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCAT 16641 ||| || | ||||||| || ||| ||||| ||||| || ||||| || |||||| | || Sbjct 844281 CGTAATTCGTGATGCTGTCACCTACACCGAACACGCCAAGCGTAAAACGGTCACCGCTAT 844340 Query 16642 GGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || || || |||||||||||||| || | | || |||||||| ||||| Sbjct 844341 GGATGTTGTATACGCCTTGAAACGTCAAGGTCGCACCCTGTACGGTTTTGGCGGTTAA 844398 >seq2937 Length=110931 Score = 104 bits (114), Expect = 4e-18 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||||||||| | | | | || ||||||||||| |||||||| ||||| ||||| Sbjct 34271 GCTAAGCGTCATCGTAAAGTTGTACGTGATAACATCCAGGGAATCACTAAGCCTGCTATT 34212 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| |||||||||||| || || || ||| | ||||| ||| | | |||||| ||| Sbjct 34211 CGACGTTTGGCTCGTCGTGAAGGTGTAAAACGTATATCTGGGTTGATATGTGAAGAAATT 34152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072177301058