Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq294 111 2e-20
seq2774 107 3e-19
seq2937 104 4e-18
>seq294
Length=36877
Score = 111 bits (122), Expect = 2e-20
Identities = 99/124 (80%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|||||||||||||| | | | | || ||||||||||| |||||||| ||||| |||||
Sbjct 35789 GCTAAGCGTCATCGTAAAGTTTTCCGTGATAACATCCAGGGAATCACTAAGCCTGCTATT 35848
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| ||| |||||||||||| ||||| || ||| | ||||| ||| | | |||||| ||
Sbjct 35849 CGACGTTTGGCTCGTCGTGAAGGAGTAAAACGTATATCTGGGTTGATATGTGAAGAAATC 35908
Query 16553 CGTG 16556
||||
Sbjct 35909 CGTG 35912
>seq2774
Length=1624295
Score = 107 bits (118), Expect = 3e-19
Identities = 92/114 (81%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || ||||||||||| || |||||||| || || || || ||| ||||||||||||||
Sbjct 844095 CTACGTGATAACATCCAGGGTATCACCAAACCGGCCATTCGCCGTTTGGCTCGTCGTGGT 844154
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567
|| || || ||| | ||||||||| | |||||||| | |||| ||| ||||||
Sbjct 844155 GGTGTAAAACGTATTTCTGGATTGATTTATGAAGAAACACGTGGTGTATTGAAG 844208
Score = 87.8 bits (96), Expect = 3e-13
Identities = 90/118 (76%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 16582 CGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCAT 16641
||| || | ||||||| || ||| ||||| ||||| || ||||| || |||||| | ||
Sbjct 844281 CGTAATTCGTGATGCTGTCACCTACACCGAACACGCCAAGCGTAAAACGGTCACCGCTAT 844340
Query 16642 GGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|||| | || || || |||||||||||||| || | | || |||||||| |||||
Sbjct 844341 GGATGTTGTATACGCCTTGAAACGTCAAGGTCGCACCCTGTACGGTTTTGGCGGTTAA 844398
>seq2937
Length=110931
Score = 104 bits (114), Expect = 4e-18
Identities = 95/120 (79%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|||||||||||||| | | | | || ||||||||||| |||||||| ||||| |||||
Sbjct 34271 GCTAAGCGTCATCGTAAAGTTGTACGTGATAACATCCAGGGAATCACTAAGCCTGCTATT 34212
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| ||| |||||||||||| || || || ||| | ||||| ||| | | |||||| |||
Sbjct 34211 CGACGTTTGGCTCGTCGTGAAGGTGTAAAACGTATATCTGGGTTGATATGTGAAGAAATT 34152
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79072177301058
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |