Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_006641.1 Length=15959 Score E Sequences producing significant alignments: (Bits) Value seq2858 134 1e-27 seq226 116 4e-22 seq2790 114 1e-21 seq130 100 3e-17 seq3195 82.4 8e-12 >seq2858 Length=122226 Score = 134 bits (148), Expect = 1e-27 Identities = 137/176 (78%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 15492 TTTTTTGGAATAACTTTCAAATAGCTCTACCGATCAATTCCAAAAACTAATCAGCTCTTA 15551 ||||| |||||||||| ||| ||| || |||||||||||| |||||||||||| || | Sbjct 84031 TTTTTGGGAATAACTTCTAAACGGCTATATCGATCAATTCCATAAACTAATCAGCACTCA 84090 Query 15552 ACATCAAAAAACCACGTCGATTGCCACCAAGCTGGTCAAAATCGGTTGATTCGTTCGAGA 15611 |||||| ||||| ||| ||||| || | || | ||||||||||| | ||| | | || Sbjct 84091 ACATCACAAAACTACGCCGATTACCGCAAACCGGGTCAAAATCGATCAATTTTCTTGCGA 84150 Query 15612 GATATCGTGAACGAAAGAAAACCGAAAAAATTG-TTTTTTCGGGATTACTCCGAAA 15666 || ||||| ||||||| ||| || | |||||| |||||| | || |||| |||| Sbjct 84151 GAAATCGTTGACGAAAG-AAATCGCATAAATTGATTTTTTTGAAATAACTCTGAAA 84205 >seq226 Length=1012918 Score = 116 bits (128), Expect = 4e-22 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 15494 TTTTGGAATAACTTTCAAATAGCTCTACCGATCAATTCCAAAAACTAATCAGCTCTTAAC 15553 ||||| ||||||| | ||| ||| |||||| ||||| || ||||||||||| | || Sbjct 881826 TTTTGAAATAACTCTGAAACGACTCGACCGATTAATTCTGAAGACTAATCAGCTTTCGAC 881885 Query 15554 ATCAAAAAACCACGTCGATTGCCACCAAGCTGGTCAAAATCGGTTGATTCGTTCGAGAGA 15613 ||||| ||||||||| ||| | || | |||||||||||||||||| ||||| |||| Sbjct 881886 TCTGAAAAATCACGTCGATGGCCGCAAACCAGGTCAAAATCGGTTGATTTGTTCGTGAGA 881945 Query 15614 TATCGTGAACGAAA 15627 |||||| |||||| Sbjct 881946 TATCGTTGACGAAA 881959 >seq2790 Length=151109 Score = 114 bits (126), Expect = 1e-21 Identities = 193/271 (71%), Gaps = 14/271 (5%) Strand=Plus/Plus Query 15492 TTTTTTGGAATAACTTTCAAATAGCTCTACCGATCAATTCCAAAAACTAATCAGCTCTTA 15551 ||||| |||||||||| |||| ||| | |||||||||||| |||||||||||| || | Sbjct 54688 TTTTTGGGAATAACTTCCAAACGGCTATGTCGATCAATTCCATAAACTAATCAGCACTCA 54747 Query 15552 ACATCAAAAAACCACGTCGATTGCCACCAAGCTGGTCAAAATCGGTTGATTCGTTCGAGA 15611 || | | |||| ||| ||||| || ||| | ||||||||||| | ||| | | || Sbjct 54748 ACCTTACCAAACTACGCCGATTACC-GCAAACGGGTCAAAATCGATAAATTTTCTTGCGA 54806 Query 15612 GATATCGTGAACGAAAGAAAACCGAAAAAATTG-TTTTTTCGGGATTACTCCGAAATTTT 15670 || ||||| ||||||| ||| || || ||| | |||||| | || ||| |||| Sbjct 54807 GAAATCGTTGACGAAAG-AAATCGCAAGAATCGATTTTTTTGAAATACCTCTGAAA---- 54861 Query 15671 CGGTTCGATCAATTAAAACCTGAA----AAT-AACTTATGAGGATGATAAAACTGCGTCG 15725 || |||| | ||| || ||||| ||| | ||| || ||| |||| | ||||| Sbjct 54862 CGACTCGACCGATT-AATTCTGAAGACTAATCAGCTTTCGACTCTGA-AAAATTACGTCG 54919 Query 15726 AATGGCACCAACCGCGTGGAAATTGGTTGAT 15756 | | | | ||||| || |||| ||||||| Sbjct 54920 ATGGCCGCAAACCGGGTCAAAATCGGTTGAT 54950 Score = 105 bits (116), Expect = 7e-19 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 15492 TTTTTTGGAATAACTTTCAAATAGCTCTACCGATCAATTCCAAAAACTAATCAGCTCTTA 15551 ||||||| |||| || | ||| ||| |||||| ||||| || ||||||||||| | Sbjct 54841 TTTTTTGAAATACCTCTGAAACGACTCGACCGATTAATTCTGAAGACTAATCAGCTTTCG 54900 Query 15552 ACATCAAAAAACCACGTCGATTGCCACCAAGCTGGTCAAAATCGGTTGATTCGTTCGAGA 15611 || ||||| |||||||| ||| | || | |||||||||||||||||| ||||| || Sbjct 54901 ACTCTGAAAAATTACGTCGATGGCCGCAAACCGGGTCAAAATCGGTTGATTTGTTCGTGA 54960 Query 15612 GATATCGTGAACGAAA 15627 ||| |||| |||||| Sbjct 54961 GATCTCGTTGACGAAA 54976 Score = 82.4 bits (90), Expect = 8e-12 Identities = 162/235 (69%), Gaps = 11/235 (5%) Strand=Plus/Plus Query 1253 CAAAAACTAATCAGCTCTTAACCATGAAAACCCCCATCGATCGCCAGCAAAAACGTTAGA 1312 || |||||||||||| || |||| | || | | |||| || ||||| || | | Sbjct 54728 CATAAACTAATCAGCACTCAACCTTACCAAACTACGCCGATTACC-GCAAACGGGTCAAA 54786 Query 1313 ATCGGTTGATGCGTTCGTGAGATATCGTTGTCGaaaaaaatcgaaaaaaGTG-ttttttt 1371 |||| | || | | |||| ||||||| ||||| |||||| || || | ||||||| Sbjct 54787 ATCGATAAATTTTCTTGCGAGAAATCGTTGACGAAAGAAATCGCAAGAATCGATTTTTTT 54846 Query 1372 GTAATAACTTCGAAATTCATGGCTCGATCGATTTAATCTTGAA----AATTTTTTATGGA 1427 | |||| || ||| | | ||||| ||| ||||| |||| ||| | | || Sbjct 54847 GAAATACCTCTGAA----ACGACTCGACCGA-TTAATTCTGAAGACTAATCAGCTTTCGA 54901 Query 1428 GCTTCAAAAACTGCGTCGATTGCCGCCAACCGCGTGAAAATCGGTTCATTTATTC 1482 | ||||| | ||||||| ||||| ||||| || |||||||||| |||| ||| Sbjct 54902 CTCTGAAAAATTACGTCGATGGCCGCAAACCGGGTCAAAATCGGTTGATTTGTTC 54956 >seq130 Length=49807 Score = 100 bits (110), Expect = 3e-17 Identities = 128/175 (73%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 15492 TTTTTTGGAATAACTTTCAAATAGCTCTACCGATCAATTCCAAAAACTAATCAGCTCTTA 15551 ||||| |||||||||| ||| ||| || |||||| ||||| |||||||| ||| || | Sbjct 43743 TTTTTGGGAATAACTTCTAAACGGCTATATCGATCATTTCCATAAACTAATTAGCACT-A 43685 Query 15552 ACATCAAAAAACCACGTCGATTGCCACCAAGCTGGTCAAAATCGGTTGATTCGTTCGAGA 15611 || ||| ||||| || ||||| | | | | ||||||||||| | ||| | | || Sbjct 43684 ACCTCACAAAACTACACCGATTACTGCAAGCCGGGTCAAAATCGATCAATTTTCTTGCGA 43625 Query 15612 GATATCGTGAACGAAAGAAAACCGAAAAAATTGTTTTTTCGGGATTACTCCGAAA 15666 || ||||| |||||||||| | |||| ||||||| | || |||| |||| Sbjct 43624 GAAATCGTTGACGAAAGAAATCGCAAAATTCAGTTTTTTTGAAATAACTCTGAAA 43570 Score = 96.9 bits (106), Expect = 4e-16 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 15492 TTTTTTGGAATAACTTTCAAATAGCTCTACCGATCAATTCCAAAAACTAATCAGCTCTTA 15551 ||||||| ||||||| | ||| | ||| |||||| |||| || ||||||||||| | Sbjct 43590 TTTTTTGAAATAACTCTGAAACAACTCGACCGATTAATTTTGAAGACTAATCAGCTTTCG 43531 Query 15552 ACATCAAAAAACCACGTCGATTGCCACCAAGCTGGTCAAAATCGGTTGATTCGTTCGAGA 15611 || |||| || ||||| ||| | || | |||||||||| |||||| ||||| || Sbjct 43530 ACTCTGAAAATTCATATCGATGGCCGCAAACCGGGTCAAAATCTATTGATTTGTTCGTGA 43471 Query 15612 GATATCGTGAACGAAA 15627 |||||||| |||||| Sbjct 43470 GATATCGTTGACGAAA 43455 >seq3195 Length=3420650 Score = 82.4 bits (90), Expect = 8e-12 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 1103 TTCACTAAACTTAGATTTCCTGAAAATTTGAACCGATTCGGACCGGTAGATTTCGAGAAA 1162 |||||| ||||||||||| || ||| ||||| |||||||||| ||||||||||||||||| Sbjct 2091787 TTCACTTAACTTAGATTTTCTAAAATTTTGAGCCGATTCGGATCGGTAGATTTCGAGAAA 2091728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 50948452389116