Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_006659.1 Length=41573 Score E Sequences producing significant alignments: (Bits) Value seq2858 120 8e-23 seq130 116 1e-21 seq226 114 3e-21 seq2790 100 8e-17 seq2846 80.6 7e-11 >seq2858 Length=122226 Score = 120 bits (132), Expect = 8e-23 Identities = 130/170 (76%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 40130 GGAATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTA 40189 |||||||||| ||||||||| || |||| ||||||| |||||||| ||| || ||||| | Sbjct 84037 GGAATAACTTCTAAACGGCTATATCGATCAATTCCATAAACTAATCAGCACTCAACATCA 84096 Query 40190 ATAAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATC 40249 |||| ||| ||||| | | | || |||||| |||| | ||| | | ||| ||| Sbjct 84097 CAAAACTACGCCGATTACCGCAAACCGGGTCAAAATCGATCAATTTTCTTGCGAGAAATC 84156 Query 40250 GTTGACGAAAGAAAACCGAAAAAAGTG-TTTTTTCGGAATTACTCCGAAA 40298 ||||||||||| ||| || | ||| || |||||| | ||| |||| |||| Sbjct 84157 GTTGACGAAAG-AAATCGCATAAATTGATTTTTTTGAAATAACTCTGAAA 84205 >seq130 Length=49807 Score = 116 bits (128), Expect = 1e-21 Identities = 128/169 (76%), Gaps = 1/169 (1%) Strand=Plus/Minus Query 40130 GGAATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTA 40189 |||||||||| ||||||||| || |||| | ||||| |||||||||||| || ||| | | Sbjct 43737 GGAATAACTTCTAAACGGCTATATCGATCATTTCCATAAACTAATTAGCACT-AACCTCA 43679 Query 40190 ATAAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATC 40249 |||| || ||||| ||| |||| |||||| |||| | ||| | | ||| ||| Sbjct 43678 CAAAACTACACCGATTACTGCAAGCCGGGTCAAAATCGATCAATTTTCTTGCGAGAAATC 43619 Query 40250 GTTGACGAAAGAAAACCGAAAAAAGTGTTTTTTCGGAATTACTCCGAAA 40298 |||||||||||||| | |||| ||||||| | ||| |||| |||| Sbjct 43618 GTTGACGAAAGAAATCGCAAAATTCAGTTTTTTTGAAATAACTCTGAAA 43570 Score = 82.4 bits (90), Expect = 2e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 40132 AATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTAAT 40191 ||||||| | |||| || ||||||||||| || |||||| |||| | || | | Sbjct 43582 AATAACTCTGAAACAACTCGACCGATTAATTTTGAAGACTAATCAGCTTTCGACTCTGAA 43523 Query 40192 AAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATCGT 40251 || || ||||| || | | || |||||| ||| |||||| ||||||||| |||||| Sbjct 43522 AATTCATATCGATGGCCGCAAACCGGGTCAAAATCTATTGATTTGTTCGTGAGATATCGT 43463 Query 40252 TGACGAAA 40259 |||||||| Sbjct 43462 TGACGAAA 43455 >seq226 Length=1012918 Score = 114 bits (126), Expect = 3e-21 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 40132 AATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTAAT 40191 ||||||| | ||||| || |||||||||||| || |||||| |||| | || | | Sbjct 881832 AATAACTCTGAAACGACTCGACCGATTAATTCTGAAGACTAATCAGCTTTCGACTCTGAA 881891 Query 40192 AAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATCGT 40251 ||| ||||||||| || | | || |||||| ||||||||||| ||||||||| |||||| Sbjct 881892 AAATCACGTCGATGGCCGCAAACCAGGTCAAAATCGGTTGATTTGTTCGTGAGATATCGT 881951 Query 40252 TGACGAAA 40259 |||||||| Sbjct 881952 TGACGAAA 881959 >seq2790 Length=151109 Score = 100 bits (110), Expect = 8e-17 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 40132 AATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTAAT 40191 |||| || | ||||| || |||||||||||| || |||||| |||| | || | | Sbjct 54849 AATACCTCTGAAACGACTCGACCGATTAATTCTGAAGACTAATCAGCTTTCGACTCTGAA 54908 Query 40192 AAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATCGT 40251 ||| |||||||| || | | || |||||| ||||||||||| ||||||||| | |||| Sbjct 54909 AAATTACGTCGATGGCCGCAAACCGGGTCAAAATCGGTTGATTTGTTCGTGAGATCTCGT 54968 Query 40252 TGACGAAA 40259 |||||||| Sbjct 54969 TGACGAAA 54976 Score = 98.7 bits (108), Expect = 3e-16 Identities = 124/169 (73%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 40130 GGAATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTA 40189 |||||||||| |||||||| | |||| ||||||| |||||||| ||| || ||| ||| Sbjct 54694 GGAATAACTTCCAAACGGCTATGTCGATCAATTCCATAAACTAATCAGCACTCAACCTTA 54753 Query 40190 ATAAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATC 40249 |||| ||| ||||| | | || | |||||| |||| | ||| | | ||| ||| Sbjct 54754 CCAAACTACGCCGATTACCG-CAAACGGGTCAAAATCGATAAATTTTCTTGCGAGAAATC 54812 Query 40250 GTTGACGAAAGAAAACCGAAAAAAGTGTTTTTTCGGAATTACTCCGAAA 40298 |||||||||||||| | || || |||||| | ||| ||| |||| Sbjct 54813 GTTGACGAAAGAAATCGCAAGAATCGATTTTTTTGAAATACCTCTGAAA 54861 >seq2846 Length=127561 Score = 80.6 bits (88), Expect = 7e-11 Identities = 81/103 (79%), Gaps = 7/103 (7%) Strand=Plus/Plus Query 34564 TTGTAATGGAAAGAAAGACAACCTGCGTAACTTTATACAGTTTTC-ACTGTACTCATGAA 34622 || ||| |||||||||| ||||| |||||||||||||| |||| |||||||||||||| Sbjct 123156 TTATAAGAGAAAGAAAGAGAACCTAAGTAACTTTATACAGCTTTCTACTGTACTCATGAA 123215 Query 34623 AACAT----CAGCC--CAGGCGTTAATGCTCCGCACTATACTT 34659 ||||| | || |||| |||||| || |||| ||||| Sbjct 123216 AACATACACTATCCTATAGGCATTAATGTTCTCCACTGTACTT 123258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132906782041020