Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_006659.1
Length=41573
Score E
Sequences producing significant alignments: (Bits) Value
seq2858 120 8e-23
seq130 116 1e-21
seq226 114 3e-21
seq2790 100 8e-17
seq2846 80.6 7e-11
>seq2858
Length=122226
Score = 120 bits (132), Expect = 8e-23
Identities = 130/170 (76%), Gaps = 2/170 (1%)
Strand=Plus/Plus
Query 40130 GGAATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTA 40189
|||||||||| ||||||||| || |||| ||||||| |||||||| ||| || ||||| |
Sbjct 84037 GGAATAACTTCTAAACGGCTATATCGATCAATTCCATAAACTAATCAGCACTCAACATCA 84096
Query 40190 ATAAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATC 40249
|||| ||| ||||| | | | || |||||| |||| | ||| | | ||| |||
Sbjct 84097 CAAAACTACGCCGATTACCGCAAACCGGGTCAAAATCGATCAATTTTCTTGCGAGAAATC 84156
Query 40250 GTTGACGAAAGAAAACCGAAAAAAGTG-TTTTTTCGGAATTACTCCGAAA 40298
||||||||||| ||| || | ||| || |||||| | ||| |||| ||||
Sbjct 84157 GTTGACGAAAG-AAATCGCATAAATTGATTTTTTTGAAATAACTCTGAAA 84205
>seq130
Length=49807
Score = 116 bits (128), Expect = 1e-21
Identities = 128/169 (76%), Gaps = 1/169 (1%)
Strand=Plus/Minus
Query 40130 GGAATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTA 40189
|||||||||| ||||||||| || |||| | ||||| |||||||||||| || ||| | |
Sbjct 43737 GGAATAACTTCTAAACGGCTATATCGATCATTTCCATAAACTAATTAGCACT-AACCTCA 43679
Query 40190 ATAAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATC 40249
|||| || ||||| ||| |||| |||||| |||| | ||| | | ||| |||
Sbjct 43678 CAAAACTACACCGATTACTGCAAGCCGGGTCAAAATCGATCAATTTTCTTGCGAGAAATC 43619
Query 40250 GTTGACGAAAGAAAACCGAAAAAAGTGTTTTTTCGGAATTACTCCGAAA 40298
|||||||||||||| | |||| ||||||| | ||| |||| ||||
Sbjct 43618 GTTGACGAAAGAAATCGCAAAATTCAGTTTTTTTGAAATAACTCTGAAA 43570
Score = 82.4 bits (90), Expect = 2e-11
Identities = 95/128 (74%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 40132 AATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTAAT 40191
||||||| | |||| || ||||||||||| || |||||| |||| | || | |
Sbjct 43582 AATAACTCTGAAACAACTCGACCGATTAATTTTGAAGACTAATCAGCTTTCGACTCTGAA 43523
Query 40192 AAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATCGT 40251
|| || ||||| || | | || |||||| ||| |||||| ||||||||| ||||||
Sbjct 43522 AATTCATATCGATGGCCGCAAACCGGGTCAAAATCTATTGATTTGTTCGTGAGATATCGT 43463
Query 40252 TGACGAAA 40259
||||||||
Sbjct 43462 TGACGAAA 43455
>seq226
Length=1012918
Score = 114 bits (126), Expect = 3e-21
Identities = 102/128 (80%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 40132 AATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTAAT 40191
||||||| | ||||| || |||||||||||| || |||||| |||| | || | |
Sbjct 881832 AATAACTCTGAAACGACTCGACCGATTAATTCTGAAGACTAATCAGCTTTCGACTCTGAA 881891
Query 40192 AAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATCGT 40251
||| ||||||||| || | | || |||||| ||||||||||| ||||||||| ||||||
Sbjct 881892 AAATCACGTCGATGGCCGCAAACCAGGTCAAAATCGGTTGATTTGTTCGTGAGATATCGT 881951
Query 40252 TGACGAAA 40259
||||||||
Sbjct 881952 TGACGAAA 881959
>seq2790
Length=151109
Score = 100 bits (110), Expect = 8e-17
Identities = 99/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 40132 AATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTAAT 40191
|||| || | ||||| || |||||||||||| || |||||| |||| | || | |
Sbjct 54849 AATACCTCTGAAACGACTCGACCGATTAATTCTGAAGACTAATCAGCTTTCGACTCTGAA 54908
Query 40192 AAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATCGT 40251
||| |||||||| || | | || |||||| ||||||||||| ||||||||| | ||||
Sbjct 54909 AAATTACGTCGATGGCCGCAAACCGGGTCAAAATCGGTTGATTTGTTCGTGAGATCTCGT 54968
Query 40252 TGACGAAA 40259
||||||||
Sbjct 54969 TGACGAAA 54976
Score = 98.7 bits (108), Expect = 3e-16
Identities = 124/169 (73%), Gaps = 1/169 (1%)
Strand=Plus/Plus
Query 40130 GGAATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTA 40189
|||||||||| |||||||| | |||| ||||||| |||||||| ||| || ||| |||
Sbjct 54694 GGAATAACTTCCAAACGGCTATGTCGATCAATTCCATAAACTAATCAGCACTCAACCTTA 54753
Query 40190 ATAAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATC 40249
|||| ||| ||||| | | || | |||||| |||| | ||| | | ||| |||
Sbjct 54754 CCAAACTACGCCGATTACCG-CAAACGGGTCAAAATCGATAAATTTTCTTGCGAGAAATC 54812
Query 40250 GTTGACGAAAGAAAACCGAAAAAAGTGTTTTTTCGGAATTACTCCGAAA 40298
|||||||||||||| | || || |||||| | ||| ||| ||||
Sbjct 54813 GTTGACGAAAGAAATCGCAAGAATCGATTTTTTTGAAATACCTCTGAAA 54861
>seq2846
Length=127561
Score = 80.6 bits (88), Expect = 7e-11
Identities = 81/103 (79%), Gaps = 7/103 (7%)
Strand=Plus/Plus
Query 34564 TTGTAATGGAAAGAAAGACAACCTGCGTAACTTTATACAGTTTTC-ACTGTACTCATGAA 34622
|| ||| |||||||||| ||||| |||||||||||||| |||| ||||||||||||||
Sbjct 123156 TTATAAGAGAAAGAAAGAGAACCTAAGTAACTTTATACAGCTTTCTACTGTACTCATGAA 123215
Query 34623 AACAT----CAGCC--CAGGCGTTAATGCTCCGCACTATACTT 34659
||||| | || |||| |||||| || |||| |||||
Sbjct 123216 AACATACACTATCCTATAGGCATTAATGTTCTCCACTGTACTT 123258
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 132906782041020
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |