Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq2718 165 9e-36
>seq2718
Length=1670031
Score = 165 bits (182), Expect = 9e-36
Identities = 458/697 (66%), Gaps = 20/697 (3%)
Strand=Plus/Minus
Query 21310 ATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTAC 21369
||| || |||||||| ||||| | |||||| || |||||||||||||| | || ||
Sbjct 71488 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAGATTCAC 71429
Query 21370 AGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTAT 21429
|| | ||| | || || || | || || || |||||| |||||| | |
Sbjct 71428 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTATTTCAAC 71369
Query 21430 TATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAATCACA 21489
|| | |||| || | | ||| |||| |||||||||||||| || |||||
Sbjct 71368 AATACGCTCATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACATGCGAAGTCACA 71309
Query 21490 ATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCC 21549
||| | || ||||| | |||| |||||| |||||||| || || |||||||| ||
Sbjct 71308 ATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCATTAAACC 71249
Query 21550 TCTCTTTTTTAACCAAAATATTGACGCAAA--TGCTCCTGAAAAGAAAATGCCCTCAACG 21607
| || || | ||| || || || ||||| ||| ||||| |||||| || ||||||
Sbjct 71248 ACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAA--GAAAATACCTTCAACG 71191
Query 21608 GCAGCAAATGCAACTAATCGTTCACC---GTATGTAGATTCTTTATCCAATATCCATTTT 21664
||||||||||||| || |||||||| || | || ||| || |||||
Sbjct 71190 GCAGCAAATGCAATTACACGTTCACCAAAGTTGGCCGA--CTTCGAAGAA-ATCCAAGCA 71134
Query 21665 TCTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTATCAATAGCTTTTAA-AAG-- 21720
||||| | |||||| ||||| || | ||||| || ||||| || || |||
Sbjct 71133 AGCGCCCAATCTGCCTTACGCTTTACGGCAGGC-ATTGTCTCTATAGCATTGAATAAGCA 71075
Query 21721 -ATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAG 21779
| ||| |||| | | | |||| |||||||||||||
Sbjct 71074 ATTCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATG----CTATACATTTCAG 71019
Query 21780 AATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAA 21839
|||| | ||| || ||||| || |||||||| || || || | |||||||| ||| |
Sbjct 71018 AATGCACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGA 70959
Query 21840 CCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAA 21899
| || | || |||| | | | |||||||| || || |||||| ||||| ||||
Sbjct 70958 CTTCCTGGCAGAAGCGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAA 70899
Query 21900 ATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATA 21959
| || || | | ||||||| |||||| ||||| || | | |||||| |
Sbjct 70898 AGGCTAACACGTGGGAAATAAAATGTCGTTCATTATCAGTGAGGCGTGCCCAATCATCCA 70839
Query 21960 AATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAA 21996
|||||| || | ||||||||| || |||||| ||
Sbjct 70838 TATCTTTAGAAAGATCTACTTCCTCTACTGTCCAGAA 70802
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531878819199440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |