Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2718 165 9e-36 >seq2718 Length=1670031 Score = 165 bits (182), Expect = 9e-36 Identities = 458/697 (66%), Gaps = 20/697 (3%) Strand=Plus/Minus Query 21310 ATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTAC 21369 ||| || |||||||| ||||| | |||||| || |||||||||||||| | || || Sbjct 71488 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAGATTCAC 71429 Query 21370 AGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTAT 21429 || | ||| | || || || | || || || |||||| |||||| | | Sbjct 71428 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTATTTCAAC 71369 Query 21430 TATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAATCACA 21489 || | |||| || | | ||| |||| |||||||||||||| || ||||| Sbjct 71368 AATACGCTCATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACATGCGAAGTCACA 71309 Query 21490 ATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCC 21549 ||| | || ||||| | |||| |||||| |||||||| || || |||||||| || Sbjct 71308 ATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCATTAAACC 71249 Query 21550 TCTCTTTTTTAACCAAAATATTGACGCAAA--TGCTCCTGAAAAGAAAATGCCCTCAACG 21607 | || || | ||| || || || ||||| ||| ||||| |||||| || |||||| Sbjct 71248 ACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAA--GAAAATACCTTCAACG 71191 Query 21608 GCAGCAAATGCAACTAATCGTTCACC---GTATGTAGATTCTTTATCCAATATCCATTTT 21664 ||||||||||||| || |||||||| || | || ||| || ||||| Sbjct 71190 GCAGCAAATGCAATTACACGTTCACCAAAGTTGGCCGA--CTTCGAAGAA-ATCCAAGCA 71134 Query 21665 TCTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTATCAATAGCTTTTAA-AAG-- 21720 ||||| | |||||| ||||| || | ||||| || ||||| || || ||| Sbjct 71133 AGCGCCCAATCTGCCTTACGCTTTACGGCAGGC-ATTGTCTCTATAGCATTGAATAAGCA 71075 Query 21721 -ATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAG 21779 | ||| |||| | | | |||| ||||||||||||| Sbjct 71074 ATTCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATG----CTATACATTTCAG 71019 Query 21780 AATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAA 21839 |||| | ||| || ||||| || |||||||| || || || | |||||||| ||| | Sbjct 71018 AATGCACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGA 70959 Query 21840 CCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAA 21899 | || | || |||| | | | |||||||| || || |||||| ||||| |||| Sbjct 70958 CTTCCTGGCAGAAGCGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAA 70899 Query 21900 ATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATA 21959 | || || | | ||||||| |||||| ||||| || | | |||||| | Sbjct 70898 AGGCTAACACGTGGGAAATAAAATGTCGTTCATTATCAGTGAGGCGTGCCCAATCATCCA 70839 Query 21960 AATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAA 21996 |||||| || | ||||||||| || |||||| || Sbjct 70838 TATCTTTAGAAAGATCTACTTCCTCTACTGTCCAGAA 70802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531878819199440