Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3107 526 3e-144 seq2718 253 3e-62 >seq3107 Length=1323484 Score = 526 bits (582), Expect = 3e-144 Identities = 1248/1862 (67%), Gaps = 54/1862 (3%) Strand=Plus/Plus Query 62016 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62075 || ||||||||||| | ||| ||||| ||||| || ||||| |||| ||| | ||| Sbjct 934448 GCTGGTTTCGTACGCAAATAATACATGCCCGTCTTGAGACCTGCCTTCCAGCCGAAGAAA 934507 Query 62076 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62135 || ||| || || || ||| | || || || | || || || | || |||||| Sbjct 934508 TGTATAGAAGTAAGCTTACCATAGTTGGGCTCAGCCACGTGTATGTTGAACGACTGACTT 934567 Query 62136 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT-GATCGTCTTTTGTGGAATTTC 62194 ||||||||||| || || | |||||||||||||| || ||| || || | ||| || Sbjct 934568 TGATCGATGAATGCACCGCGATCTGCAGCCATTTTGATTGAT-GTTTTCACGGAAATCTC 934626 Query 62195 CCAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAA-GGTTTG--TATTCTGAATGG 62250 ||||| |||||| || | |||| || | | | ||| | || || |||| || |||| Sbjct 934627 CCAAACAGTTTTGTATAGATCGCGTA-TGTGCTGTGGTATGGATTCAATATTTTGTATGG 934685 Query 62251 ATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 62310 | || | | | ||||| ||||||| || ||||||| ||| || |||||||| Sbjct 934686 AGCCGCGACTGGTTATAATATTATTCTTCATATCATCATCCCACAAACCCAACTCGGTTA 934745 Query 62311 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 62370 | | | | | || |||| || ||||||||||| || || | || | || || | Sbjct 934746 GATCGCGCAACAAGTGATGATTTACAACTTGAAATTCACCTGAAAGCACACGACGTGTAT 934805 Query 62371 AAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 62430 ||||||| || || ||||| | |||||||| || |||| |||||| || ||||| | Sbjct 934806 AAATATTGGAAGTGTATGGTTCAAATGACTCATTGTTGCCCATAATTTGTGCTGTTGAAG 934865 Query 62431 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTC--TGATTTTATC 62488 |||| ||||| || || | || |||| || | | ||| ||||| | ||||| || Sbjct 934866 CAGTTGGCATGGGCGCAAGCAGTAAAGAGTTGCGGACACC--ATGTTGCTTTATTTTCTC 934923 Query 62489 TTTTAGA--GGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGT 62546 || | ||| ||||||||||||||| | ||| ||| Sbjct 934924 CTTCAATTCGGT--CCAATTCCAAAGATCAGTTGGTGTTTTATCCCACATGTCATACTGT 934981 Query 62547 AGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCT 62606 |||||||| ||||| || || ||| | || || || || || || || || ||| Sbjct 934982 AGAATACCCTTACTAACGGGTGAACCTTCGTAAGTTTCATAGGGGCCAAGTTTTTCGGCT 935041 Query 62607 AGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGA 62666 | ||| ||||| || || || || || || ||||| |||||||| || | || ||| | | Sbjct 935042 AATTCGCAACTAGCTTCCAAGGCGCCATAGTAAATTGTTTCGAATATTTGCTGATTCAAA 935101 Query 62667 TCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCT 62726 | |||||| || || |||||||| | | ||| || ||||| || || || Sbjct 935102 AGTAATGCTTCTTCACTTTCGTATGGATAACGCATTAAAATTAAAGCGTCAGCAAAACCC 935161 Query 62727 TGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCA--GCTTCTGGAATAG 62784 || || ||||||||||| || | |||||| ||| || |||| || || || | | Sbjct 935162 TGTACTCCAATACCGATGGGACGATGTCTGAAATTCGA--TTTCCTTGCCTCCGGTAAGG 935219 Query 62785 GATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCT 62844 |||||| |||||| ||||| |||||||| | ||| | || |||| || || Sbjct 935220 GATAATGATTAATGTCTATTATTTTATTCAAATTACGTGTAACGGTTTTGGTGACCTC-- 935277 Query 62845 TCAGTTTGAGAAAATCAAA-TCGCCCATCTATT--------ACAAACATGTTCAAGGCAA 62895 |||||| | ||| ||| | | | || |||||||| ||||| || | Sbjct 935278 ----TTTGAGGCGCTTAAAGTCGTACGTTTTTTCGGGTGTGACAAACATATTCAACGCGA 935333 Query 62896 CAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGC 62955 || |||| || || || |||||||||| || | | ||||| | || || || | Sbjct 935334 TTGAAGCCAAGTTGCACACAGCTACCTCATCAGGTGCTGAATATTCCACAATTTCGGTAC 935393 Query 62956 AAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 63015 | | |||||||||||| || || || | ||| ||||||||||||||| ||||| |||| Sbjct 935394 ATAAATTACTACACTTAATTGTACCAACATTCTGTTGATTACTCTTTCGATTACAAGCAT 935453 Query 63016 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 63075 | ||||| | ||| |||| || || || || | || ||||| ||||| ||| | | Sbjct 935454 CTTTATACAACATGTATGGTGTGCCGGTCTCCACTTGCGATTCAATAAT-GCTAAACCAA 935512 Query 63076 CGACTC-GAGCCTTTATTATAG-ATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAA 63133 |||| | || |||| | | ||| | | ||||| || || | ||| ||| || Sbjct 935513 AGACTTTGTGCTTTTACTTTCTTATTAGCACGTCCTTCCTGTT-CATATTTCAGATATAA 935571 Query 63134 TCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAA 63193 | ||||||||| || ||||| || | | | || ||||| | | |||||||| | Sbjct 935572 TTTTTCGAACTCTTCACCCCATACTTCATGTAGACCGGGACACTTGTGTGGACACATTAG 935631 Query 63194 CGACCACTCTCCGTCATC--CTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 63250 |||||| ||| |||| |||| || ||||||||||| |||||||| ||||| | ||| Sbjct 935632 CGACCAGTCT---TCATTGGCTTCTACACGTTTCATAAATAGATCAGGTATCCACAAAGC 935688 Query 63251 TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 63310 ||| | |||||||| | ||| || || || || || || || || | ||| | || Sbjct 935689 ATAAAACAAATCTCTGGCGCGATGCTCTTCTTTCCCAGTGTTTTTCTTCAAATCCAAAAA 935748 Query 63311 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63370 | |||||||| |||||| ||||||| ||| ||||| | | || || ||||| Sbjct 935749 TTGGAAAATATCAGCATGCCATGGTTCCAGGTAGATGGCAAATGCGCCTGGACGTTTACC 935808 Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 || || ||||| | || | || ||||| | |||| |||||| || | | ||| Sbjct 935809 GCCACCTTGATCCACATAGCGTGCTACATTATTGAACACTCGCAACATAGGCACCAAACC 935868 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT---AT-TACTAA 63486 ||||||| | ||||| ||||| | || | || | ||||| || || ||| Sbjct 935869 GTTTGATGTGCCATTTGTACCCGCAATTGCAGTGCCTTTTGCACGTATGCAATGTAC--G 935926 Query 63487 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG-TGTCA 63545 || ||||| || ||||| || ||| || || ||||| ||| | | | || ||| | Sbjct 935927 TT--CAGACCAATACCCCCAGCAGATTTGGAAATCAATGCACATTGATGTGCCGATGTGA 935984 Query 63546 TAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63605 | || || || ||| ||| || | |||| | |||||||| || |||| ||| | Sbjct 935985 -AAATCCCATCAATGGAATCGTCCACCATGGTCAGTAGAAAGCATGATGACAATTGCGGC 936043 Query 63606 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGT 63665 | | || | ||| |||| || |||||||| |||||||| | ||| ||||| Sbjct 936044 TGCTTGGTGGCAGCAGCGAATAGCGTTGGAGAAGCATGCGTAAAATAACGTTCGGAAAGC 936103 Query 63666 AGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGC 63725 | ||||| || || || |||| ||||| || ||| || || | || |||||| Sbjct 936104 AAGTTGTATGTTTCGATTGCTGCATCTATGTCTTCGCCATGTATACCGATGGCAACACGC 936163 Query 63726 ATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTT 63785 |||||||| ||||| |||| ||||| || ||| |||| ||| | ||| ||||| | Sbjct 936164 ATTAACATATGCTGTGGTCGCTCAACAATTTTGCCATTTAATTTTAGCAAATAGGAACGT 936223 Query 63786 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAG 63845 || | |||||||||||||||||| || || ||| || || || |||||||| | ||| Sbjct 936224 TCAAGAGTTTTAAAACCAAAATAATTATAACCAAAATCGCGGTCATAAATAATGGCAGAG 936283 Query 63846 TT 63847 || Sbjct 936284 TT 936285 >seq2718 Length=1670031 Score = 253 bits (280), Expect = 3e-62 Identities = 487/712 (68%), Gaps = 7/712 (1%) Strand=Plus/Minus Query 33129 AATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT 33188 || ||| | ||| || || ||||| ||||| ||| | || |||||||| || || Sbjct 71497 AAGCAAACGATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGAT 71438 Query 33189 AAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTAT 33248 || || || || | ||| |||| | ||||| || ||||| || || || | || Sbjct 71437 TAGATTCACCGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAAT 71378 Query 33249 AATAG-ATCTA-ACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACAT 33306 || | | | ||| | | | ||| ||| || | |||||||| |||||||||||| Sbjct 71377 TATTTCAACAATACGCT--CATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACAT 71320 Query 33307 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 33366 ||||| || || || || ||||| |||| ||||||||| |||||||| || | || Sbjct 71319 GCGAAGTCACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCT 71260 Query 33367 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATT 33426 ||||||| ||||| || |||||||| || || ||||| || ||| ||||| || Sbjct 71259 GGCATTAAACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAAATA 71200 Query 33427 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG--CTGTCATGTA-TC 33483 ||||| || |||||||| ||||| | | || ||| | ||| || | | | || Sbjct 71199 CCTTCAACGGCAGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTTCGAAGAAATC 71140 Query 33484 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 33543 || | |||||||| ||||| ||||| |||||| || ||||| ||||| || Sbjct 71139 CAAGCAAGCGCCCAATCTGCCTTACGCTTTACGGCAGGCATTGTCTCTATAGCATTGAAT 71080 Query 33544 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 33603 | | || ||| || || |||| ||| ||||| || || | ||||||||||| Sbjct 71079 AAGCAATTCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCA 71020 Query 33604 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT 33663 ||||| | || || || || || |||||||| ||||| || | ||||| || | || Sbjct 71019 GAATGCACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGG 70960 Query 33664 ACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 33723 ||||| || || ||||| | | |||||||||||| || || ||| || || ||| Sbjct 70959 ACTTCCTGGCAGAAGCGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAA 70900 Query 33724 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG 33783 || || || || || ||||||| | ||| | || || |||||||| Sbjct 70899 AAGGCTAACACGTGGGAAATAAAATGTCGTTCATTATCAGTGAGGCGTGCCCAATCATCC 70840 Query 33784 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835 ||||||||||| | ||||||||| || |||||||| || ||||| ||||||| Sbjct 70839 ATATCTTTAGAAAGATCTACTTCCTCTACTGTCCAGAACGATGCTTCTGCCT 70788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622921456706960