Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq3107 118 1e-21 seq2707 107 2e-18 seq1558 89.7 5e-13 >seq3107 Length=1323484 Score = 118 bits (130), Expect = 1e-21 Identities = 494/763 (65%), Gaps = 34/763 (4%) Strand=Plus/Plus Query 147450 TGCTGATTGACCACTTGATACTCGCCCGACAGAACTCTTCGTACGTACAAATTACTAGTA 147509 || ||||| || |||||| | || || || || || | ||| || | ||| ||| Sbjct 934760 TGATGATTTACAACTTGAAATTCACCTGAAAGCACACGACGTGTATAAATATTGGAAGTG 934819 Query 147510 AACGGCTCGAACGACTCGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATGTAA 147569 | || || || ||||| ||||| || | ||| ||||| || | || || |||||| Sbjct 934820 TATGGTTCAAATGACTCATTGTTGCCCATAATTTGTGCTGTTGAAGCAGTTGGCATGGGC 934879 Query 147570 GCAATCAATAATGAATTGCGTAAGCCGTGCATAGCCAT---TTCTCGCTTAAGCTCGTCC 147626 |||| || ||| || ||||| | || || | || | ||||| ||| | ||| | Sbjct 934880 GCAAGCAGTAAAGAGTTGCGGACACCATG--TTGCTTTATTTTCTC-CTTCAATTCGGTC 934936 Query 147627 CAGTTCCAAAGATCATTCGATTGGTTAATATTCCACAAATCAAACTGTAAAAGTCCACAA 147686 || |||||||||||| | | | ||| ||| ||||| ||| |||||| || || | Sbjct 934937 CAATTCCAAAGATCAGTTGGT--GTTT-TATCCCACATGTCATACTGTAGAATACCCTTA 934993 Query 147687 CTTGCAGGGCTTCCATCGTAAGAATCGTATGTTCCGTGCAGTTTAGCTAGTTCGATACTT 147746 || | || || ||||||| || || | || | || |||| |||| ||| Sbjct 934994 CTAACGGGTGAACCTTCGTAAGTTTCATAGGGGCCAAGTTTTTCGGCTAATTCGCAACTA 935053 Query 147747 TGACTT--AGTGCACCATAATAAATAGTTTCTGAAATCTTTTTATTTAAATCTCTAGCCT 147804 ||| | || ||||| ||||| ||||| | || | | ||| ||| | || | Sbjct 935054 G--CTTCCAAGGCGCCATAGTAAATTGTTTCGAATATTTGCTGATTCAAAAGTAATGCTT 935111 Query 147805 CTTGGCTGTCGTAGGGCATATCC----AAAATGGCGAACGTATCCGCAAGTCCTTGAATA 147860 ||| || ||||| || ||| | ||||| || | || |||| || || | Sbjct 935112 CTTCACTTTCGTATGG-ATAACGCATTAAAATT---AAAGCGTCAGCAAAACCCTGTACT 935167 Query 147861 CCGATACCGATGGGTCGGTGTCTGAAATTCGA--TGCTTGAGCGCTAGCCAACGGATAAA 147918 || ||||||||||| || |||||||||||||| | ||| || | || |||||| Sbjct 935168 CCAATACCGATGGGACGATGTCTGAAATTCGATTTCCTT--GCCTCCGGTAAGGGATAAT 935225 Query 147919 AATTCAAGTCGATAATTTTATTGAGATTATTGGTAACCACTCTAGATACATTGTAGAGCG 147978 ||| | ||| || |||||||| | |||| ||||| | | | || | | ||| Sbjct 935226 GATTAATGTCTATTATTTTATTCAAATTACGTGTAACGGTTTTGGTGACCTCTTTGAGGC 935285 Query 147979 ACTTAAAGTCGAAGCTTTTAAACTGTTTATTGGCAAAATTATTTACGGCAATCGAGGCCA 148038 |||||||||| | |||| || || |||| |||| | || || || |||| Sbjct 935286 GCTTAAAGTCGTACGTTTTTTCGGGT---GTGACAAACATATTCAACGCGATTGAAGCCA 935342 Query 148039 AGTTACACACGGCCGTTTCTCGATTGTCGCT--ATATTGAACGATTTCGGCACACAGATT 148096 |||| ||||| || | ||| | ||| ||||| || ||||||| ||| | ||| Sbjct 935343 AGTTGCACACAGC--TACCTCATCAGGTGCTGAATATTCCACAATTTCGGTACATAAATT 935400 Query 148097 GCTGTTTCGAATCACTCCCTCGtttttttGATTATTTTTATTGTTAACGTG-ATCTTTAA 148155 || ||| || | || | ||||||| | || | | | || | ||||||| Sbjct 935401 ACTACACTTAATTGTACCAACATTCTGTTGATTACTCTT-TCGATTACAAGCATCTTTAT 935459 Query 148156 ACATCATGTATGGAGCTCCGGTCTCGACTTGAGTCTCAATAAT 148198 ||| ||||||||| | |||||||| ||||| | |||||||| Sbjct 935460 ACAACATGTATGGTGTGCCGGTCTCCACTTGCGATTCAATAAT 935502 >seq2707 Length=1765650 Score = 107 bits (118), Expect = 2e-18 Identities = 154/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 71655 AATTCGAGCATAATCAAA--CGCATGATGAACTATGGAATGCTGCTCAGCGACAGCTACG 71712 ||||||| || | |||| | |||||||| || |||||||||||||| ||| || Sbjct 1307073 AATTCGAACA--AGCAAATACACATGATGACCTCTGGAATGCTGCTCAAATACAACTGGT 1307130 Query 71713 CAATGAGGGTAAAATTCACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTG 71772 ||| || ||||| ||||||| || || | ||| ||||| |||||||| || || || Sbjct 1307131 TCGTGAAGGCAAAATGCACGGATTTCTTCGTAAGTATTGGGCTAAAAAGATACTGGAATG 1307190 Query 71773 GACTCAAACT--CCCGAGCAGGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGT 71830 | || |||| || || ||||||| || | | |||||| ||||||| | ||| ||| Sbjct 1307191 G--TCCAACTCACCAGAAGAGGCGCTAGAAATTGCAATTTATTTAAACGACAAATATAGT 1307248 Query 71831 CTCGACGGTCGCGATCCTAACGGTTATGTCGGT 71863 | || || | ||| | ||||||||||| ||| Sbjct 1307249 TTAGATGGCAGAGATTCCAACGGTTATGTGGGT 1307281 >seq1558 Length=2163639 Score = 89.7 bits (98), Expect = 5e-13 Identities = 163/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 26757 TAGTCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAA 26816 ||| | | ||||||||| | || || ||||| |||||||| || | || ||| | || Sbjct 2033936 TAGACGAGCAAAATGCAGATTTTCGTCAAAACCTTAACTGGTAAGACCATTACCTTAGAG 2033995 Query 26817 TTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATA 26876 | || | ||||||||||| | |||||| || || || ||||| || || Sbjct 2033996 GTCGAGCCTTCTGACACCATCGAAAATGTCAAAGCTAAAATCCAAGATAAAGAGGGCATC 2034055 Query 26877 CCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTC 26936 || || |||||||| | | || | || ||| || ||| | ||||||| | | | | | Sbjct 2034056 CCCCCAGATCAACAGCGTTTGATCTTCGCCGGAAAGCAATTGGAAGATGGTCGCACCTTG 2034115 Query 26937 AGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||| ||||| ||||| || || || ||||| |||| ||| | ||| | || || Sbjct 2034116 TCCGACTACAACATCCAAAAGGAGTCAACCCTCCATTTGGTTCTGCGTCTTCGTGGTGG 2034174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478642619276320