Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3107 286 9e-72 seq314 147 6e-30 seq2718 102 2e-16 >seq3107 Length=1323484 Score = 286 bits (316), Expect = 9e-72 Identities = 1120/1747 (64%), Gaps = 43/1747 (2%) Strand=Plus/Minus Query 363433 AATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCAT 363492 ||||| | |||||||| || || ||||||||||||||||||||||| || ||||| ||| Sbjct 936201 AATGGCAAAATTGTTGAGCGACCACAGCATATGTTAATGCGTGTTGCCATCGGTATACAT 936142 Query 363493 TGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACG 363552 || || | ||||| || || |||||||| || | || | ||| || ||| Sbjct 936141 GGCGAAGACATAGATGCAGCAATCGAAACATACAACTTGCTTTCCGAACGTTATTTTACG 936082 Query 363553 CACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTT 363612 || || | ||||| | | | ||||| || | || || |||| || |||||| Sbjct 936081 CATGCTTCTCCAACGCTATTCGCTGCTGCCACCAAGCAGCCGCAATTGTCATCATGCTTT 936022 Query 363613 CTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACA----CACTTAAGAATTG 363668 || || | ||| |||||||||||| || || || ||| ||| ||| | | || Sbjct 936021 CTACTGACCATGGTGGACGATTCCATTGATGGGAT-TTTCACATCGGCACATCAA---TG 935966 Query 363669 TGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCC-ACAATG--TTCGTGC 363725 ||| | |||||||| ||| || || |||||| | || | ||| || | ||||| Sbjct 935965 TGCATTGATTTCCAAATCTGCTGGGGGTATTGGTCT---GAACGTACATTGCATACGTGC 935909 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 | | || | ||| || ||| || || || || |||| || ||| | || Sbjct 935908 AAAAGGCACTGCAATTGCGGGTACAAATGGCACATCAAACGGTTTGGTGCCTATGTTGCG 935849 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845 ||||| | ||| || | || || || || ||||| || || || ||| || || Sbjct 935848 AGTGTTCAATAATGTAGCACGCTATGTGGATCAAGGTGGCGGTAAACGTCCAGGCGCATT 935789 Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA 363905 ||| || || || || || ||||| |||||||| | ||| | || | |||||| Sbjct 935788 TGCCATCTACCTGGAACCATGGCATGCTGATATTTTCCAATTTTTGGATTTGAAGAAAAA 935729 Query 363906 CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCA 363965 ||| || ||||| || || || | ||| |||| ||||| | ||| | |||| | Sbjct 935728 CACTGGGAAAGAAGAGCATCGCGCCAGAGATTTGTTTTATGCTTTGTGGATACCTGATCT 935669 Query 363966 TTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCC 364025 |||||||| || || || || | | | ||||| || | || |||||| | ||||| Sbjct 935668 ATTTATGAAACGTGTAGAAGCCAATGAAGACTGGTCGCTAATGTGTCCACACAAGTGTCC 935609 Query 364026 AGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGA 364085 ||||| || ||||||||||| || | | |||| || |||||| ||| Sbjct 935608 CGGTCTACATGAAGTATGGGGTGAAGAGTTCGAAAAATTATATCTGAAATATGAACAGGA 935549 Query 364086 GGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCA 364145 ||| ||| ||||| | | ||||| | || |||||| ||| || || ||||| Sbjct 935548 AGGACGTGCTAATAAGAAAGTAAAAGCACAAAGTCTTTGGTTTAGCATTATTGAATCGCA 935489 Query 364146 GATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCA 364205 | ||||| || ||||| || |||||||| |||||| | || || || ||| || || Sbjct 935488 AGTGGAGACCGGCACACCATACATGTTGTATAAAGATGCTTGTAATCGAAAGAGTAATCA 935429 Query 364206 GCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGC 364265 ||| | ||||||||||| || || || |||||||||| ||| | ||||| | || Sbjct 935428 ACAGAATGTTGGTACAATTAAGTGTAGTAATTTATGTACCGAAATTGTGGAATATTCAGC 935369 Query 364266 TCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAA-- 364323 || || ||| || || || ||| | || || |||||| | |||||| | | Sbjct 935368 ACCTGATGAGGTAGCTGTGTGCAACTTGGCTTCAATCGCGTTGAATATGTTTGTCACACC 935309 Query 364324 -GATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCT 364382 || || | ||| ||| || | || || ||| | | ||| | ||| | Sbjct 935308 CGAAAAAACGTACGACTTTAAGCGCCTCAAAGAGGTCACCAAAACCGTTACACGTAATTT 935249 Query 364383 CGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCG 364442 | || | || |||| ||| ||||||| | || || || | || ||| | | Sbjct 935248 GAATAAAATAATAGACATTAATCATTATCCCTTACCGGAGGCAAGGAAATCGAATTTCAG 935189 Query 364443 TCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTT---TTATGATGC---- 364495 ||||| || || ||| |||| |||||||| | ||||||| || || | |||| Sbjct 935188 ACATCGTCCCATCGGTATTGGAGTACAGGGTTTTGCTGACGCTTTAATTTTAATGCGTTA 935129 Query 364496 TCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAA 364555 || | | | | | | || | || || | ||| || | || || ||||||| Sbjct 935128 TCCATACGAAAGTGAAGAAGCATTAC-------TTTTGAATCAGCAAATATTCGAAACAA 935076 Query 364556 TGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGC--AAAAACCAAGGGAAAGTACTC 364613 | || | || ||| || ||| || || || || |||||| || || Sbjct 935075 TTTACTATGGCGCCTTGGAAGCTAGTTGCGAATTAGCCGAAAAAC--TTGGCCCCTATGA 935018 Query 364614 TACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCAC 364673 ||||| || || || || || |||| | | |||| ||| | ||| || || Sbjct 935017 AACTTACGAAGGTTCACCCGTTAGTAAGGGTATTCTACAGTATGACATGTGGGATAAAAC 934958 Query 364674 GCCATCTGTCCGATGGAACTGG---GATACGCTACGTTCCAACGTTAAGAAGCATGGTAC 364730 ||| ||| | ||||| ||| || | | | || | ||| | |||||| Sbjct 934957 ACCAACTGATCTTTGGAATTGGACCGAATTG--AAG-GAGAAAATAAAGCAACATGGTGT 934901 Query 364731 TCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAA 364790 |||||||| | | ||||||||||| || ||||| || ||||| || | || || Sbjct 934900 CCGCAACTCTTTACTGCTTGCGCCCATGCCAACTGCTTCAACAGCACAAATTATGGGCAA 934841 Query 364791 CAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGA 364850 ||| |||| || ||||| | || |||| ||||| |||| || || ||||| || || Sbjct 934840 CAATGAGTCATTTGAACCATACACTTCCAATATTTATACACGTCGTGTGCTTTCAGGTGA 934781 Query 364851 ATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGA 364910 ||||| || || ||| | || | | ||||| |||| || |||||| ||| Sbjct 934780 ATTTCAAGTTGTAAATCATCACTTGTTGCGCGATCTAACCGAGTTGGGTTTGTGGGATGA 934721 Query 364911 CAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCC 364970 |||||||| |||| || || | || || | || || ||| | | || Sbjct 934720 TGATATGAAGAATAATATTATAACCAGTCGCGGCTCCATACAAAATATTGAATCCATACC 934661 Query 364971 AGAAGATCTGAAGC-CTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTG 365029 | || | | || | | |||||||| || ||||| |||||| || ||| || Sbjct 934660 A-CAGCACATACGCGATCTATACAAAACTGTTTGGGAGATTTCCGTGAAAACATCAATCA 934602 Query 365030 ATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGA 365089 | ||||| || ||||||||||| || ||| ||| || |||||||| ||| || | || Sbjct 934601 AAATGGCTGCAGATCGCGGTGCATTCATCGATCAAAGTCAGTCGTTCAACATACACGTGG 934542 Query 365090 CTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTA 365149 || |||| | || | |||||||| || || ||||||| ||| ||||| | ||||| | Sbjct 934541 CTGAGCCCAACTATGGTAAGCTTACTTCTATACATTTCTTCGGCTGGAAGGCAGGTCTCA 934482 Query 365150 AGACAGG 365156 |||| || Sbjct 934481 AGACGGG 934475 >seq314 Length=932230 Score = 147 bits (162), Expect = 6e-30 Identities = 419/636 (66%), Gaps = 6/636 (1%) Strand=Plus/Minus Query 111290 AATGCGTTTTAATCTGTCAACTCATTTTCCACTTCTCACAACAAAGCGAACATATTGGAA 111349 |||||| || |||| || | ||||||| | || || ||||||||| || |||| Sbjct 384673 AATGCGCTTCGATCTCCGAAATAGTTTTCCATTACTAACTACAAAGCGAGTATTTTGGCG 384614 Query 111350 GGGAATTGTCGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGC 111409 | | | ||||||| | || |||||| ||| || | ||| | || || |||| Sbjct 384613 TGCTGTCGCCGAAGAATTGCTATGGTTTGTTCATGGTAAAACAGACGCTAAAATACTTCA 384554 Query 111410 AGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCA-GTTG 111468 || ||||||| | | || ||||| ||||| | | || || |||| | | | Sbjct 384553 AGAAAAAAATATTCACATATGGGACGGAAACAGTAATAGGGAGTTCTTAGACAAATGCGG 384494 Query 111469 GTCTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACT 111528 || || | || | || ||||||||||| || |||||||| || ||||| ||||| || | Sbjct 384493 GTTTTCT-GATAGGGAGGAAGGTGATCTAGGCCCAGTTTATGGTTTTCAGTGGCGTCATT 384435 Query 111529 TTGGTGCAGACTACAAAACCATGCACG-ACTCATATGATTCACAGGGAACTGATCAATTA 111587 |||| || | |||| || | |||| | || || | |||| | |||||| | Sbjct 384434 TTGGGGCCAAGTACAGAAAC-TGCAAGGACAGTTACAAAGATGAGGGTATAGATCAACTT 384376 Query 111588 CAGAATGTCATTGATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCA 111647 ||| | || ||||| || | || || |||| | ||| || ||||| ||| ||| Sbjct 384375 CAGCAAGTAATTGACACTATCAGAAATAATCCAAATGATCGACGTATTATAATGTCTGCT 384316 Query 111648 TGGAACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGC-CAGTT 111706 ||||| || | | ||||||| || ||||| |||||| | | ||| || || Sbjct 384315 TGGAATCCTGTCGATATCCCTCAAATGGCGCTACCACCTTGTCATTGTCT-TGCACAATT 384257 Query 111707 TTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCT 111766 || ||| | | || | | || || ||| | || || || ||| ||||| || | Sbjct 384256 TTTTGTTGCCAATGGAGAGTTATCTTGTCAATTATACCAACGCAGTGCCGATATGGGATT 384197 Query 111767 TGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTAC 111826 ||||| || ||||||||||| ||||| | ||||| | | || |||||| |||| Sbjct 384196 GGGTGTACCATTTAATATTGCCTCGTACGCTTTGCTTACCTATATGATTGCTCATATTAC 384137 Query 111827 AAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCA 111886 ||||| ||| || || ||| | ||| | | || ||||| ||||| || | || || Sbjct 384136 TGATCTCCGACCAGGGGATTTCGTCCACACTTTGGGCGATGCACATGTCTATAATAATCA 384077 Query 111887 CATTGATGCACTTAAAACACAGTTGAAGCGCAAACC 111922 ||||| ||| | ||| |||||| | ||| |||| Sbjct 384076 TATTGAAGCATTAAAAGAACAGTTAACGCGAGAACC 384041 >seq2718 Length=1670031 Score = 102 bits (112), Expect = 2e-16 Identities = 155/214 (72%), Gaps = 9/214 (4%) Strand=Plus/Plus Query 22440 TAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAA--CGTTCA--TTCGCGGAACGTC 22495 |||||||||||||||||| ||||| | ||| || || || | |||||| Sbjct 71116 TAAGGCAGATTGGGCGCTTGCTTGGATTT-CTTCGAAGTCGGCCAACTTTGGTGAACGTG 71174 Query 22496 TTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGG-AGCATTTTG-TGCAATCTT 22553 | ||||||||||||| |||||||| |||||||| ||| || ||||| | | ||||| Sbjct 71175 TAATTGCATTTGCTGCCGTTGAAGGTATTTTCTTCAGTGGCAG--TTTTGCTTCGATCTT 71232 Query 22554 TTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCG 22613 ||||| || ||||||| | ||||| || | || ||||| ||||| ||||| || Sbjct 71233 CTGGCTTAAGAAACGTGGTTTAATGCCAGGCTTGACATTTTCCAATGAACTAATTTCACG 71292 Query 22614 AGATGAGGGTCTTCATACCGATTTTGCGTGTATG 22647 ||||||||| |||||| || || || ||| || Sbjct 71293 AGATGAGGGACTTCATTGTGACTTCGCATGTTTG 71326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303298392385292