Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq3107 122 7e-23 seq1558 105 6e-18 seq603 91.5 1e-13 >seq3107 Length=1323484 Score = 122 bits (134), Expect = 7e-23 Identities = 550/851 (65%), Gaps = 37/851 (4%) Strand=Plus/Plus Query 131863 CACGGTGAATTGAATTGTATTCGCAGCAGGCTTAGTTCTTAAATAATACATGCCCGTCTT 131922 ||| || ||||| || | ||| ||||| || || || | |||||||||||||||||||| Sbjct 934423 CACAGTAAATTGTATAGCATTTGCAGCTGGTTTCGTACGCAAATAATACATGCCCGTCTT 934482 Query 131923 CAAGCCTTTCTCCCAA--GAATAATTGTGTATGGACGATAAAATTTTG-TAGCTGGGATT 131979 | ||| || ||| ||| || ||| || || | ||| || ||| |||| | Sbjct 934483 GAGACCTGCCTTCCAGCCGAAGAAATGTATA--GAAG-TAAGCTTACCATAGTTGGGCTC 934539 Query 131980 GGCCACAAACAGATTGAGCGATTGACTCTGATCGATGTAAGGTCCCCTGTCTGCGGCCAT 132039 ||||| | |||| ||| ||||| ||||||||| | | || | ||||| ||||| Sbjct 934540 AGCCACGTGTATGTTGAACGACTGACTTTGATCGATGAATGCACCGCGATCTGCAGCCAT 934599 Query 132040 ATTCAACAATACTTTCTGCTTAATTTCCCAAGCGGTCTTGAAGAG--CGCCTTGACGTCG 132097 || | || |||| ||| |||||| | || ||| | || ||| | | || Sbjct 934600 TTTGATTGATGTTTTCACGGAAATCTCCCAAACAGTTTTGTATAGATCGCGT--ATGTGC 934657 Query 132098 TGTGGAATGTCATCGATATTCTGTACAGATCCGTTGTTTTTGATAATTTTCATCATCAGT 132157 ||||| ||| || ||||| |||| || ||| | | ||||| || || ||| Sbjct 934658 TGTGGTATGGATTCAATATTTTGTATGGAGCCGCGACTGGTTATAATATTATTCTTCATA 934717 Query 132158 TCTGTCGAGTACACGTTGCAGTCTACGAGTTTATCG----ACGAGATGTTGATTTACTAT 132213 || || | ||| | || || | |||| || || || |||||||| | Sbjct 934718 TCA-TC-ATCCCACAAACCCAACT-CGGTTAGATCGCGCAACAAG-TGATGATTTACAAC 934773 Query 132214 TTGATATTCACCCGATAAGACTCTTCGTACGTACAAATTACTAGTAAACGGCTCGAACGA 132273 |||| ||||||| || | || | ||| || | ||| ||| | || || || || Sbjct 934774 TTGAAATTCACCTGAAAGCACACGACGTGTATAAATATTGGAAGTGTATGGTTCAAATGA 934833 Query 132274 TTCGTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGGCATGTAGGCAATCAATAATGA 132333 || ||||| |||| ||||| ||||| | || || |||||| |||| || ||| || Sbjct 934834 CTCATTGTTGCCCATAATTTGTGCTGTTGAAGCAGTTGGCATGGGCGCAAGCAGTAAAGA 934893 Query 132334 ATTGCGCAGCCCGTGTATGGCCATTTGCCGTTTAAGCTCGTCCCAGTTCCACAGATCATT 132393 ||||| | || ||| |||| | || | ||| ||| ||||| |||||| | Sbjct 934894 GTTGCGGACACCATGTTGCTTTATTTTCTCCTTCAATTCGGTCCAATTCCAAAGATCAGT 934953 Query 132394 CGATTGAGAGATATTCCACAAATCAAACTGTAAATGACCGCTACTTGCAGGAGATCCGTT 132453 | | | ||| ||||| ||| |||||| | ||| |||| | || || || | Sbjct 934954 TGGT---GTTTTATCCCACATGTCATACTGTAGAATACCCTTACTAACGGGTGAACCTTC 935010 Query 132454 ATAAGAATCGTATGCTCCGTGTAATTTGGCAAGTTCTATGCT-CTGACT--CAGGGCACC 132510 |||| || || | || || || ||| | ||| || || || || ||| || Sbjct 935011 GTAAGTTTCATAGGGGCCAAGTTTTTCGGCTAATTC---GCAACTAGCTTCCAAGGCGCC 935067 Query 132511 ATAATAAATAGTCTCTGAGATTTTTCTATTCAATTCCCTTGCTTGTTGACTGTCGTAGGG 132570 ||| ||||| || || | |||| |||||| ||||| || ||| ||||| || Sbjct 935068 ATAGTAAATTGTTTCGAATATTTGCTGATTCAAAAGTAATGCTTCTTCACTTTCGTATGG 935127 Query 132571 CAAAT---TTAAAATAGCGAACGCATCGGCAAGTCCCTGAATGCCGATACCGATGGGTCT 132627 || ||||||| || || || |||| ||||| | || ||||||||||| | Sbjct 935128 ATAACGCATTAAAATT---AAAGCGTCAGCAAAACCCTGTACTCCAATACCGATGGGACG 935184 Query 132628 ATGTTTAAAATTCGA--TACTTGTGCGCTAGTCAGCGGATAAAAGTTTTTGTCTATTATT 132685 |||| | |||||||| | |||| | | || || |||||| || ||||||||||| Sbjct 935185 ATGTCTGAAATTCGATTTCCTTG-CCTCCGGTAAG-GGATAATGATTAATGTCTATTATT 935242 Query 132686 TTATTGAGATT 132696 ||||| | ||| Sbjct 935243 TTATTCAAATT 935253 >seq1558 Length=2163639 Score = 105 bits (116), Expect = 6e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 23979 TAGCCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAA 24038 ||| | | ||||||||| | || || ||||| |||||||| || | |||||| | || Sbjct 2033936 TAGACGAGCAAAATGCAGATTTTCGTCAAAACCTTAACTGGTAAGACCATTACCTTAGAG 2033995 Query 24039 GTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATA 24098 |||||| | ||||||||||| | |||||| || || || ||||| ||||| Sbjct 2033996 GTCGAGCCTTCTGACACCATCGAAAATGTCAAAGCTAAAATCCAAGATAAAGAGGGCATC 2034055 Query 24099 CCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTC 24158 || || ||||||||| | |||| | || ||| |||||| | ||||||| | | | | Sbjct 2034056 CCCCCAGATCAACAGCGTTTGATCTTCGCCGGAAAGCAATTGGAAGATGGTCGCACCTTG 2034115 Query 24159 AGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||| || ||||| ||||| || || || | ||||| || Sbjct 2034116 TCCGACTACAACATCCAAAAGGAGTCAACCCTCCATTTGGT 2034156 >seq603 Length=780983 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | ||||| ||| | || ||| | ||||||||| || Sbjct 747553 ATGCAAATCTTCGTTAAGACCCTCACTGGCAAAACCATCACCTTGGAAGTCGAGCCCTCA 747612 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| ||| | || || ||||| || ||||||||||| || || |||||| Sbjct 747613 GATACCATTGAGAATGTTAAGGCTAAGATCCAAGATAAAGAAGGCATTCCACCAGATCAA 747672 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||||| | |||||||||||| || |||| | | | ||| || || Sbjct 747673 CAACGTTTGATTTTTGCCGGCAAGCAACTTGAGGATGGACGTACTTTGTCCGACTACAAT 747732 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 || || || ||||| ||| | ||||| ||| || Sbjct 747733 ATACAGAAGGAATCGACACTCCATTTGGTGCTA 747765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429918677072430