Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3107 167 2e-36 seq1558 134 1e-26 seq603 122 8e-23 seq2605 93.3 4e-14 >seq3107 Length=1323484 Score = 167 bits (184), Expect = 2e-36 Identities = 722/1123 (64%), Gaps = 38/1123 (3%) Strand=Plus/Plus Query 145049 AAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGAC 145108 |||| ||||| || || ||||| || || | | ||||||||| ||| | || || Sbjct 934757 AAGTGATGATTTACAACTTGAAATTCACCTGAAAGCACACGACGTGTATAAATATTGGAA 934816 Query 145109 GTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATG 145168 ||| | |||||||| ||||| || ||||||| ||||| || || | || || |||||| Sbjct 934817 GTGTATGGTTCAAATGACTCATTGTTGCCCATAATTTGTGCTGTTGAAGCAGTTGGCATG 934876 Query 145169 TACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCC 145228 ||| | || ||| || ||||| | || || | ||| || | ||||| | | Sbjct 934877 GGCGCAAGCAGTAAAGAGTTGCGGACACCATGTTGCTTTATTTTCTCCTTCAATTCGGTC 934936 Query 145229 CAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTG 145288 |||| ||| || ||| || | ||||||||||| ||||| | ||| |||| || Sbjct 934937 CAATTCCAAAGATCAGTTGGTGTTTTATCCCACATGTCATACTGTAGAATACCCTTACTA 934996 Query 145289 GCGGGGCTGCCTT-GAAAGGAACTGTAACTGCCCCAAGTTTT--GGCGAGCTCGCAACTC 145345 |||| |||| | ||| | | | ||||||||| ||| | |||||||| Sbjct 934997 ACGGGTGAACCTTCGTAAG---TTTCATAGGGGCCAAGTTTTTCGGCTAATTCGCAACTA 935053 Query 145346 GCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCA 145405 || |||| ||||| | |||||||| ||| |||||| || | || | ||||| Sbjct 935054 GCTTCCAAGGCGCCATAGTAAATTGTTTCGAATATTTGCTGATTCAAAAGTAATGCTTCT 935113 Query 145406 TCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACG 145465 || || ||||| || |||| | | ||||| || || | ||||||| ||| | Sbjct 935114 TCACTTTCGTATGGATAACGCATTAAAATTAAAGCGTCAGCAAAACCCTGTACTCCAATA 935173 Query 145466 CCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGG 145525 |||||||| |||||| | | || |||| ||| | | ||||| ||||| | Sbjct 935174 CCGATGGGACGATGTCTGAAATTCGATTTCCTTGCCTCCGGTAAGGGATAATGATTAATG 935233 Query 145526 TCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAA----TGTGCCGCAACTTTTC 145581 || || ||||||||||| || || || || || | | || || ||| Sbjct 935234 TCTATTATTTTATTCAAATTACGTGTAACGGTTTTGGTGACCTCTTTGAGGC-GCTT--- 935289 Query 145582 AAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATT 145641 |||||| || ||| || || ||| |||| | ||||| || ||||| || Sbjct 935290 AAAGTCGTACGTTTTTTCGGGTGTGA-CAAACA--TATTCAACGCGATTGAAGCCAAGTT 935346 Query 145642 ACAAACTGCCGTCTCCTCGGCGTCGCTG--TATTGTACGATCTCGGCGCACAAATTGCTA 145699 || || || ||| || | || |||| |||| || || |||| || ||||| ||| Sbjct 935347 GCACACAGCTACCTCATCAG-GT-GCTGAATATTCCACAATTTCGGTACATAAATTACTA 935404 Query 145700 CATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGC 145759 || || || || || | ||| || |||||||| || | || || || || || || | | Sbjct 935405 CACTTAATTGTACCAACATTCTGTTGATTACTCTTTCGATTACAAGCATCTTTATACAAC 935464 Query 145760 ATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT--AAAACGGTGCAAGTC-CTGC 145816 ||||| ||| ||| |||||||| |||| || | || |||| ||| | || Sbjct 935465 ATGTATGGTGTGCCGGTCTCCACTTGCGATTCAATAATGCTAAAC---CAAAGACTTTGT 935521 Query 145817 GCACGCACCTGCTGCTGGTAG--CGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAA 145874 || || | || | ||| || || || | ||| |||||| || | | || | Sbjct 935522 GCTTTTACTTTCT--TATTAGCACGTCCTTCCTGTTCATATTTCAGATATAATTTTTCGA 935579 Query 145875 ACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATA 145934 || | ||| | || || ||||||||||||| |||||||| |||||||| Sbjct 935580 ACTCTTCACCCCATACTTCATGTAGACCGGGACACTTGTGTGGACACATTAGCGACCAGT 935639 Query 145935 CGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGT 145994 | | ||||| | || || | |||||| | ||| || | ||||| || || | ||| | Sbjct 935640 CTTCATTGGCTTCTACACGTTTCATAAATAGATCAGGTATCCACAAAGCATAAAACAAAT 935699 Query 145995 CGC--GCGCTTTGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGAT 146052 | | |||| ||| || || || ||||| |||||||| | | | || Sbjct 935700 CTCTGGCGCGATGC--TCTTCTTTCCCAGTGTTTTTCTTCAAATCCAAAAATTGGAAAAT 935757 Query 146053 GTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTT---GCCACCCTG 146109 || || ||||| ||||| | |||| ||| | || ||| ||||| |||||| || Sbjct 935758 ATCAGCATGCCATGGTTCCAGGTAGATGGCAAATGCGCCTGGACGTTTACCGCCACCTTG 935817 Query 146110 GTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGC 146152 ||||| | ||| | | || || || || |||| ||| ||| Sbjct 935818 ATCCACATAGCGTGCTACATTATTGAACACTCGCAACATAGGC 935860 >seq1558 Length=2163639 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||||| || ||||| | ||| ||||||||||| |||||||| ||| | Sbjct 2034174 CCACCACGAAGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGAC 2034115 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || | ||||| || ||| |||| |||||||| || || || ||| Sbjct 2034114 AAGGTGCGACCATCTTCCAATTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGG 2034055 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || ||||| || |||||| |||| | || | || || | | ||||| Sbjct 2034054 ATGCCCTCTTTATCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACC 2033995 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||| ||||| |||| ||||| |||||||||||||| Sbjct 2033994 TCTAAGGTAATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 2033948 >seq603 Length=780983 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || || || || |||||||||| || || ||||| ||||| || || ||| | Sbjct 746024 CCACCACGTAAGCGTAGAACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCGGAC 745965 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| | ||| ||||| ||| | || ||||| || || || || ||| Sbjct 745964 AGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGG 745905 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTT-GAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||| || || ||| ||| |||| || | ||| | ||||||| | ||| | Sbjct 745904 ATTCCTTCCTTATCT-TGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAAC 745846 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | |||||| || || | |||||| ||||||||||||||| Sbjct 745845 CTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCATG 745797 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| || || ||||| | || |||||||| || |||||||||||| Sbjct 745797 GCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGA 745738 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||| || || || || || || |||||||||| || || || || || Sbjct 745737 CAGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGG 745678 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGA 131185 ||||||||||||||| ||| | | |||| | | | || | |||||||| | || | Sbjct 745677 GATTCCTTCTTTGTC-TTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAA 745619 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || | || || ||||| || ||||| Sbjct 745618 CCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 745570 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| ||||| || || ||||| || | ||| || ||||| ||||||||||| ||| | Sbjct 747551 CCACCACGCAAGCGAAGGACTAAGTGGAGGGTTGATTCCTTCTGAATGTTGTAGTCGGAC 747492 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| | |||||||| || | || ||||| || || || || ||| Sbjct 747491 AAGGTACGTCCATCCTCCAATTGCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTGGG 747432 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| || || |||||| |||| | ||| | || || | | ||| | Sbjct 747431 ATTCCTTCCTTATCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCAGATGGCTCAACT 747372 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTT 131219 || | ||| | |||||| || || || || || Sbjct 747371 TCCAAGGTGATGGTTTTGCCAGTGAGGGTCTT 747340 >seq2605 Length=276952 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 131004 TGAGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC 131063 || |||||| | | ||| || |||||||| | || ||||| || ||||| || || || Sbjct 242127 TGCGCCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTC 242068 Query 131064 GCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGG 131123 || ||||| || || | ||||| || || | |||| |||||| || || || Sbjct 242067 AGCCAATGTGCGACCATCTTCCAATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGG 242008 Query 131124 AGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTC 131183 || |||||||| || || ||||| ||| | || || | |||||| | | ||| Sbjct 242007 GGGAATTCCTTCCTTATCTTGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGCTC 241948 Query 131184 GATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | || | || | ||| ||||| || || |||||||||||||| ||||| Sbjct 241947 AACCTCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAAAATTTGCAT 241897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471993294071040