Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq370 156 3e-33
seq603 131 1e-25
seq2605 107 1e-18
seq581 100 2e-16
>seq370
Length=898501
Score = 156 bits (172), Expect = 3e-33
Identities = 164/214 (77%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221
||||| || | || || ||||||||||| | ||| |||||||| || ||||||||
Sbjct 361569 ATGGGTTCCGTTAATGTGAATCGTAATGTCACCGACATTTTCTACCGTTATAAAATGCCA 361628
Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281
||| | || |||||||||||||| || ||||| || |||||||| ||||| || |||
Sbjct 361629 CGCTTGCAAGCTAAGGTCGAGGGTAAAGGTAACGGCATCAAAACCGTTATTGTTAATATG 361688
Query 6282 CCTGAAGTCGCTAAGGCGC--TCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGT 6339
||||||| || | |||| ||||||| || || ||||| ||||| || ||||| || |
Sbjct 361689 GCTGAAGTGGC--ACGCGCCATCGGACGTCCGGCTACCTATCCGACCAAGTATTTTGGCT 361746
Query 6340 GCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373
||||| | |||||||| || || ||||| ||||
Sbjct 361747 GCGAATTGGGCGCTCAAACACAATTTGACTACAA 361780
Score = 82.4 bits (90), Expect = 5e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434
|| || || ||||| || || || || || | | ||| ||||||| | || ||
Sbjct 361862 AATGAACGTTTCATTGTAAATGGCTCCCACGATGCCAGCAAATTGCAGGATCTGCTCGAT 361921
Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494
|| ||||| ||||| || || |||| | ||||||||| || ||||||||||| | |
Sbjct 361922 GGTTTTATACGCAAATTCGTCTTGTGCCCGGAATGCGACAATCCGGAGACCGATTTAACC 361981
Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAG 6554
|| || | |||| | ||||| || || | |||||||| ||||||| |||||
Sbjct 361982 GTCTCGGCTAAGAATCAAACCATTTCGCAAGCATGCAAAGCTTGCGGTTTTCATGGTCTC 362041
Query 6555 CTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCA 6602
| | | ||||| | ||||| ||||| |||||||||| |||
Sbjct 362042 TTAAAAGTCAATCACAAGGTTAACACGTTCATTTTGAAGAATCCGCCA 362089
>seq603
Length=780983
Score = 131 bits (144), Expect = 1e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | | ||| | ||||||||||| || |||||| || || |||||||| |||
Sbjct 745796 CCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGAC 745737
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| | ||| |||| || | |||||| |||||||| |||| ||||||||||| | ||||
Sbjct 745736 AGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGG 745677
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||||||||||| ||| || || ||||| | | |||||| ||||||
Sbjct 745676 ATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACC 745617
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| | || || || || || |||||||| |||||||| || ||||| ||
Sbjct 745616 TCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 745567
Score = 118 bits (130), Expect = 7e-22
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | || || | || ||||| |||||| ||||| |||||||| || || |
Sbjct 746026 TACCACCACGTAAGCGTAGAACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCGG 745967
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
||| ||| | || || || ||||| || || || || | ||||||||||| | ||
Sbjct 745966 ACAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGG 745907
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| ||||| || || |||||| || ||||||| | ||||| | ||||
Sbjct 745906 GGATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAA 745847
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
| || || || || ||||| |||||||| ||||| ||||| |||||||||
Sbjct 745846 CCTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCATG 745797
Score = 105 bits (116), Expect = 4e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161
||| | ||||||||| || || ||||| || |||||||| || |||||| |||| |
Sbjct 747768 ACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGACAAAGTACGTCC 747709
Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221
|| || | ||| || |||||||| || | ||||||||||| | || | |||||||||
Sbjct 747708 ATCCTCAAGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCTTT 747649
Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281
|| || || ||| ||||||| | |||||| || ||||| || || ||
Sbjct 747648 ATCTTGGATCTTAGCCTTAACATTCTCAATGGTATCTGAGGGCTCGACTTCCAAGGTGAT 747589
Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||||| || || | ||| || ||||| || |||||
Sbjct 747588 GGTTTTGCCAGTGAGGGTCTTAACGAAGATTTGCAT 747553
>seq2605
Length=276952
Score = 107 bits (118), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
|||||||| | ||| | || ||||| | || ||| || |||||||| || |||| |
Sbjct 242123 CCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCC 242064
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
|| || | || || ||||| ||||||||||| ||||| || |||||||| | |||
Sbjct 242063 AATGTGCGACCATCTTCCAATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGGGGA 242004
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||||| || || |||||| ||| |||| | | |||||| | |||||
Sbjct 242003 ATTCCTTCCTTATCTTGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGCTCAACC 241944
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| | || || || |||||||| | |||||| ||||| || |||||
Sbjct 241943 TCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAAAATTTGCAT 241897
>seq581
Length=806958
Score = 100 bits (110), Expect = 2e-16
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 756122 CTCTCTATTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTSTCAT 756063
Query 20007 GGTAATATTTAG 20018
||| ||||||||
Sbjct 756062 GGTTATATTTAG 756051
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334933704349286
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |