Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3107 500 1e-136 seq2718 277 2e-69 >seq3107 Length=1323484 Score = 500 bits (554), Expect = 1e-136 Identities = 1240/1861 (67%), Gaps = 52/1861 (3%) Strand=Plus/Plus Query 61871 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 61930 || ||||||||||| | ||| ||||| ||||| || ||||| |||| ||| | ||| Sbjct 934448 GCTGGTTTCGTACGCAAATAATACATGCCCGTCTTGAGACCTGCCTTCCAGCCGAAGAAA 934507 Query 61931 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 61990 || ||| || || || ||| | || || || | || || || | || |||||| Sbjct 934508 TGTATAGAAGTAAGCTTACCATAGTTGGGCTCAGCCACGTGTATGTTGAACGACTGACTT 934567 Query 61991 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCC 62050 ||||||||||| || || | |||||||||||||| || || || | ||| ||| Sbjct 934568 TGATCGATGAATGCACCGCGATCTGCAGCCATTTTGATTGATGTTTTCACGGAAATCTCC 934627 Query 62051 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAA-GGTTTG--TATTCTGAATGGA 62106 |||| |||||| || | |||| || | | | ||| | || || |||| || ||||| Sbjct 934628 CAAACAGTTTTGTATAGATCGCGTA-TGTGCTGTGGTATGGATTCAATATTTTGTATGGA 934686 Query 62107 TCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62166 || | | | ||||| ||||||| || ||||||| ||| || |||||||| Sbjct 934687 GCCGCGACTGGTTATAATATTATTCTTCATATCATCATCCCACAAACCCAACTCGGTTAG 934746 Query 62167 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 62226 | | | | | || |||| || ||||||||||| || || | || | || || || Sbjct 934747 ATCGCGCAACAAGTGATGATTTACAACTTGAAATTCACCTGAAAGCACACGACGTGTATA 934806 Query 62227 AATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 62286 |||||| || || ||||| | |||||||| || |||| |||||| || ||||| || Sbjct 934807 AATATTGGAAGTGTATGGTTCAAATGACTCATTGTTGCCCATAATTTGTGCTGTTGAAGC 934866 Query 62287 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTT--CTGATTTTATCT 62344 ||| ||||| || || | || |||| || | | ||| ||||| | ||||| || Sbjct 934867 AGTTGGCATGGGCGCAAGCAGTAAAGAGTTGCGGACACC--ATGTTGCTTTATTTTCTCC 934924 Query 62345 TTTA--GAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTA 62402 || | ||| ||||||||||||||| | ||| |||| Sbjct 934925 TTCAATTCGGT--CCAATTCCAAAGATCAGTTGGTGTTTTATCCCACATGTCATACTGTA 934982 Query 62403 GAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTA 62462 ||||||| ||||| || || ||| | || || || || || || || || |||| Sbjct 934983 GAATACCCTTACTAACGGGTGAACCTTCGTAAGTTTCATAGGGGCCAAGTTTTTCGGCTA 935042 Query 62463 GTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGAT 62522 ||| ||||| || || || || || || ||||| |||||||| || | || ||| | | Sbjct 935043 ATTCGCAACTAGCTTCCAAGGCGCCATAGTAAATTGTTTCGAATATTTGCTGATTCAAAA 935102 Query 62523 CTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTT 62582 | ||||| || || |||||||| | | ||| || ||||| || || || | Sbjct 935103 GTAATGCTTCTTCACTTTCGTATGGATAACGCATTAAAATTAAAGCGTCAGCAAAACCCT 935162 Query 62583 GAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTC--AGCTTCTGGAATAGG 62640 | || ||||||||||| || | |||||| ||| |||||| || || || | || Sbjct 935163 GTACTCCAATACCGATGGGACGATGTCTGAAATT--CGATTTCCTTGCCTCCGGTAAGGG 935220 Query 62641 ATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTT 62700 ||||| |||||| ||||| |||||||| | ||| | || |||| || || Sbjct 935221 ATAATGATTAATGTCTATTATTTTATTCAAATTACGTGTAACGGTTTTGGTGACCTC--- 935277 Query 62701 CAGTTTGAGAAAATCAAA-TCGCCCATCTATT--------ACAAACATGTTCAATGCAAC 62751 |||||| | ||| ||| | | | || |||||||| ||||| || | Sbjct 935278 ---TTTGAGGCGCTTAAAGTCGTACGTTTTTTCGGGTGTGACAAACATATTCAACGCGAT 935334 Query 62752 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 62811 || |||| || || || |||||||||| || | | ||||| | || || || || Sbjct 935335 TGAAGCCAAGTTGCACACAGCTACCTCATCAGGTGCTGAATATTCCACAATTTCGGTACA 935394 Query 62812 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 62871 | |||||||||||| || || || | ||| ||||||||||||||| ||||| ||||| Sbjct 935395 TAAATTACTACACTTAATTGTACCAACATTCTGTTGATTACTCTTTCGATTACAAGCATC 935454 Query 62872 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 62931 ||||| | ||| |||| || || || || | || ||||| ||||| ||| | | Sbjct 935455 TTTATACAACATGTATGGTGTGCCGGTCTCCACTTGCGATTCAATAAT-GCTAAACCAAA 935513 Query 62932 GAC-TCGAGCCTTTA-TTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAAT 62989 ||| | | || |||| || ||| | | || || || ||| ||| ||| ||| Sbjct 935514 GACTTTGTGCTTTTACTTTCTTATTAGCACGTCCTTCCT-GTTCATATTTCAGATATAAT 935572 Query 62990 CGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAAC 63049 ||||||||| || ||||| || | | || || ||||| | | |||||||| | | Sbjct 935573 TTTTCGAACTCTTCACCCCATACTTCATGTAGACCGGGACACTTGTGTGGACACATTAGC 935632 Query 63050 GACCACTCTCCGTCAT--CCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63106 ||||| ||| |||| |||| || ||||||||||| |||||||| ||||| | ||| Sbjct 935633 GACCAGTCT---TCATTGGCTTCTACACGTTTCATAAATAGATCAGGTATCCACAAAGCA 935689 Query 63107 ATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 63166 ||| | |||||||| | ||| || || || || || || || || | ||| | || Sbjct 935690 TAAAACAAATCTCTGGCGCGATGCTCTTCTTTCCCAGTGTTTTTCTTCAAATCCAAAAAT 935749 Query 63167 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 63226 | |||||||| |||||| ||||||| ||| ||||| | | || || ||||| Sbjct 935750 TGGAAAATATCAGCATGCCATGGTTCCAGGTAGATGGCAAATGCGCCTGGACGTTTACCG 935809 Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 || || ||||| | || | || ||||| | |||| |||||| || | | ||| Sbjct 935810 CCACCTTGATCCACATAGCGTGCTACATTATTGAACACTCGCAACATAGGCACCAAACCG 935869 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT---AT-TACTAAT 63342 || ||||| ||||| || || | || | || | ||||| || || ||| | Sbjct 935870 TTTGATGTGCCATTTGTACCCGCAATTGCAGTGCCTTTTGCACGTATGCAATGTAC--GT 935927 Query 63343 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG-TATCAT 63401 | ||||| || ||||| || ||| || || ||||| ||| | | | || | | | Sbjct 935928 T--CAGACCAATACCCCCAGCAGATTTGGAAATCAATGCACATTGATGTGCCGATGTGA- 935984 Query 63402 AGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 63461 | || || || || ||| |||| |||| | |||||||| || |||| ||| | Sbjct 935985 AAATCCCATCAATGGAATCGTCCACCATGGTCAGTAGAAAGCATGATGACAATTGCGGCT 936044 Query 63462 GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTA 63521 | | || | ||| |||| || |||||||| || ||||| | ||| ||||| | Sbjct 936045 GCTTGGTGGCAGCAGCGAATAGCGTTGGAGAAGCATGCGTAAAATAACGTTCGGAAAGCA 936104 Query 63522 GATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCA 63581 ||||| || || || |||| ||||| || ||| || || | || ||||||| Sbjct 936105 AGTTGTATGTTTCGATTGCTGCATCTATGTCTTCGCCATGTATACCGATGGCAACACGCA 936164 Query 63582 TTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTT 63641 ||||||| ||||| |||| ||||| || ||| |||| ||| | ||| ||||| || Sbjct 936165 TTAACATATGCTGTGGTCGCTCAACAATTTTGCCATTTAATTTTAGCAAATAGGAACGTT 936224 Query 63642 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63701 | | |||||||||||||||||| || || ||| || || || |||||||| | |||| Sbjct 936225 CAAGAGTTTTAAAACCAAAATAATTATAACCAAAATCGCGGTCATAAATAATGGCAGAGT 936284 Query 63702 T 63702 | Sbjct 936285 T 936285 >seq2718 Length=1670031 Score = 277 bits (306), Expect = 2e-69 Identities = 491/712 (69%), Gaps = 7/712 (1%) Strand=Plus/Minus Query 32486 AATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT 32545 || ||| | ||| || |||||||| ||||| ||| | || |||||||| || || Sbjct 71497 AAGCAAACGATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGAT 71438 Query 32546 AAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTAT 32605 || || || || | ||| |||| | ||||| || ||||| || || || | || Sbjct 71437 TAGATTCACCGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAAT 71378 Query 32606 AATAG--ATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACAT 32663 || | ||| | | | ||| ||| | | |||||||| |||||||||||| Sbjct 71377 TATTTCAACAATACGCT--CATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACAT 71320 Query 32664 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 32723 ||||| || || || || ||||| |||| ||||| ||| |||||||| || | || Sbjct 71319 GCGAAGTCACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCT 71260 Query 32724 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATT 32783 ||||||| ||||| || |||||||| || || || ||||| ||| |||||||| Sbjct 71259 GGCATTAAACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAAATA 71200 Query 32784 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG--CTGTCATGTA-TC 32840 ||||| || || ||||| ||||| | | || ||| | ||| || | | | || Sbjct 71199 CCTTCAACGGCAGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTTCGAAGAAATC 71140 Query 32841 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAG 32900 || | |||||||| ||||| ||||| ||||||||||||||||||||| || Sbjct 71139 CAAGCAAGCGCCCAATCTGCCTTACGCTTTACGGCAGGCATTGTCTCTATAGCATTGAAT 71080 Query 32901 AGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCC 32960 | | || ||| || || |||| |||||||||||| || | ||||||||||| Sbjct 71079 AAGCAATTCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCA 71020 Query 32961 GAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGT 33020 ||||| | || || || || ||||||||||| |||||||| | ||||| || | || Sbjct 71019 GAATGCACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGG 70960 Query 33021 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 33080 ||||| || || ||||| ||| |||||||||||| || || ||| || || ||| Sbjct 70959 ACTTCCTGGCAGAAGCGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAA 70900 Query 33081 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG 33140 || || || || || ||||||| | ||| | || || |||||||| Sbjct 70899 AAGGCTAACACGTGGGAAATAAAATGTCGTTCATTATCAGTGAGGCGTGCCCAATCATCC 70840 Query 33141 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33192 ||||||||||| | ||| ||||| || |||||||| || ||||| ||||||| Sbjct 70839 ATATCTTTAGAAAGATCTACTTCCTCTACTGTCCAGAACGATGCTTCTGCCT 70788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633605815157600