Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2605 138 1e-27 seq603 131 1e-25 >seq2605 Length=276952 Score = 138 bits (152), Expect = 1e-27 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 24997 CAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGT 25056 |||||||||| || ||||| || | || ||||| ||||||| | || || ||| | | Sbjct 241895 CAATGCAAATTTTCGTAAAAACCCTTACGGGTAAGACCATCACTCTTGAGGTTGAGCCTT 241954 Query 25057 CTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 | || ||||| || | ||| | |||| ||| || || ||||| ||||| ||||| Sbjct 241955 CGGATACTATTGAACATGTTAAGGCCAAAATTCAA-GATAAGGAAGGAATTCCCCCTGAT 242013 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | ||||||||||| || ||||| ||||||| |||||| ||| || || Sbjct 242014 CAACAGCGTCTAATTTTTGCCGGAAAGCAATTGGAAGATGGTCGCACATTGGCTGACTAT 242073 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||| ||||| || || | |||||||| || | || ||||| || Sbjct 242074 AATATTCAGAAAGAGTCTACATTGCATTTAGTACTTCGTCTTAGAGGTGG 242123 >seq603 Length=780983 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || || ||| ||||||| | ||||| ||| | || Sbjct 747553 ATGCAAATCTTCGTTAAGACCCTCACTGGCAAAACCATCACCTTGGAAGTCGAGCCCTCA 747612 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || ||| | ||| || ||| || |||||||| |||||||| || ||| Sbjct 747613 GATACCATTGAGAATGTTAAGGCTAAGATCCAAGATAAAGAAGGCATTCCACCAGATCAA 747672 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | |||||||||||||| ||| | || |||| || ||| || ||| |||||| Sbjct 747673 CAACGTTTGATTTTTGCCGGCAAGCAACTTGAGGATGGACGTACTTTGTCCGACTACAAT 747732 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || ||||| || || ||||| |||||| | || | ||||| Sbjct 747733 ATACAGAAGGAATCGACACTCCATTTGGTGCTACGTCTTCGCGGAGG 747779 Score = 125 bits (138), Expect = 6e-24 Identities = 159/216 (74%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || |||||||| || ||| ||||||| | || || ||| | || Sbjct 745798 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 745857 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || ||| | || |||| |||| ||| || || ||||| || || || || Sbjct 745858 GATACCATTGAG--AATGTCAAAGCTAAAATTCAA-GATAAGGAAGGAATCCCCCCAGAT 745914 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || | ||||| || |||||||| || || |||| ||||| || ||| || Sbjct 745915 CAACAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTAT 745974 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||||||| || |||||||| ||||||||||| ||| Sbjct 745975 AATATTCAGAAGGAATCCACTCTACATTTAGTTCTA 746010 Score = 111 bits (122), Expect = 1e-19 Identities = 156/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| ||||| || || ||||||| | || || || | || Sbjct 745569 AATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCATC 745628 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || ||||| || | || |||| || | ||| ||||||||||| || || || || Sbjct 745629 CGATACTATTGAA--AATGTTAAAGCTAAGATTCAA-GACAAAGAAGGAATCCCCCCAGA 745685 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| || | || |||||||| |||||| | ||||| | |||||| || |||||| Sbjct 745686 TCAACAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGCACTCTGTCCGATTA 745745 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || || || || || ||||| || || Sbjct 745746 CAACATCCAGAAGGAGTCTACACTTCATTTGGTTCT 745781 Score = 109 bits (120), Expect = 5e-19 Identities = 146/200 (73%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 25014 AAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCA 25073 ||||| | || || ||| ||||||| | ||||| ||| | |||||||| || ||| | Sbjct 747340 AAGACCCTCACTGGCAAAACCATCACCTTGGAAGTTGAGCCATCTGACACCATTGAG--A 747397 Query 25074 CTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATT 25130 || |||| |||| || || || ||||| || ||||| || ||||| || | ||| Sbjct 747398 ATGTCAAAGCCAAAATCCAA-GATAAGGAAGGAATCCCACCAGATCAACAACGTTTGATT 747456 Query 25131 TTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAA 25190 ||||||||||| ||||| || |||| || || || ||| ||||| ||||| || ||| Sbjct 747457 TTTGCCGGCAAGCAATTGGAGGATGGACGTACCTTGTCCGACTACAACATTCAGAAGGAA 747516 Query 25191 TCCACGCTACATTTAGTGCT 25210 || || || || ||||| || Sbjct 747517 TCAACCCTCCACTTAGTCCT 747536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433310540402390