Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2718 295 7e-75 seq114 138 1e-27 >seq2718 Length=1670031 Score = 295 bits (326), Expect = 7e-75 Identities = 487/701 (69%), Gaps = 4/701 (1%) Strand=Plus/Minus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985 |||||| |||||||| || || | ||||| | | |||||||| || | ||| || Sbjct 71488 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAGATTCAC 71429 Query 92986 AGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTAT 93045 || | |||||| || ||||| || | ||| ||| ||| ||||| | ||||| | Sbjct 71428 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTATTTCAAC 71369 Query 93046 --TACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCG 93103 ||| || ||| ||||||||||| | || | | |||| || || || ||||| Sbjct 71368 AATACGCTC--ATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACATGCGAAGTCA 71311 Query 93104 GTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGT 93163 ||| | || || |||||||| || | |||||| ||||| || ||||| | | Sbjct 71310 CAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCATTAAA 71251 Query 93164 CCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACG 93223 || |||||||| ||||| || || ||||||||||| ||| || || |||||||| ||| Sbjct 71250 CCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAAATACCTTCAACG 71191 Query 93224 GCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAA 93283 || |||||||| | | |||||| |||| || || || || ||||| | Sbjct 71190 GCAGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTTCGAAGAAATCCAAGCAAGC 71131 Query 93284 GCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCT 93343 |||||||| || || ||| | ||| | ||| || ||||| || |||| | ||| Sbjct 71130 GCCCAATCTGCCTTACGCTTTACGGCAGGCATTGTCTCTATAGCATTGAATAAGCAATTC 71071 Query 93344 CGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACA 93403 | | | ||| || || |||||||| ||||| | ||||||||||||||| ||| Sbjct 71070 CTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCAGAATGCACA 71011 Query 93404 TTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGA 93463 |||||||| |||||||| ||||| ||||| || | || || || | || ||||| || Sbjct 71010 TTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACTTCCTGG 70951 Query 93464 GAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAAT 93523 | || | || || | ||||||||| || |||||||| ||||| || ||||| || || Sbjct 70950 CAGAAGCGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAGGCTAAC 70891 Query 93524 ATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTT 93583 | || ||||||||| |||| ||| | || ||||||| | |||||| Sbjct 70890 ACGTGGGAAATAAAATGTCGTTCATTATCAGTGAGGCGTGCCCAATCATCCATATCTTTA 70831 Query 93584 GAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 |||||||| ||||| || || ||||| |||||||||||||| Sbjct 70830 GAAAGATCTACTTCCTCTACTGTCCAGAACGATGCTTCTGC 70790 >seq114 Length=3050747 Score = 138 bits (152), Expect = 1e-27 Identities = 98/110 (89%), Gaps = 3/110 (3%) Strand=Plus/Plus Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGG 126319 || |||||||||||||||| |||||||||||||||||||||| |||||||||| ||| Sbjct 2488185 TATAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGG 2488244 Query 126320 AGCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 ||||||||||||||||||||||||||||||||| |||| |||||| || Sbjct 2488245 AGCGTGGGTTCGAACCCCACACCTGACAAATTA-AATTGATATTTTTTTT 2488293 Score = 129 bits (142), Expect = 7e-25 Identities = 87/95 (92%), Gaps = 3/95 (3%) Strand=Plus/Minus Query 126255 TTCTATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC 126314 |||||| | ||||||||||||||||| |||||||||||||||||||||| |||||||||| Sbjct 2462585 TTCTATAT-CAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCC 2462527 Query 126315 --TCGGGAGCGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||||||||| Sbjct 2462526 GAGAGGGAGCGTGGGTTCGAACCCCACACCTGACA 2462492 Score = 125 bits (138), Expect = 8e-24 Identities = 80/86 (93%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| Sbjct 2486841 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 2486900 Query 126324 TGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||||||| Sbjct 2486901 TGGGTTCGAACCCCACACCTGACAAA 2486926 Score = 123 bits (136), Expect = 3e-23 Identities = 91/104 (88%), Gaps = 3/104 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||| ||||| |||||||||| |||||| Sbjct 2464111 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCGAGAGGGAGC 2464052 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT-TATTATTGGAATTTT 126365 ||||||||||||||||||| ||||| || | | |||||||||| Sbjct 2464051 GTGGGTTCGAACCCCACACTTGACATATGTTTGTTTGGAATTTT 2464008 Score = 120 bits (132), Expect = 3e-22 Identities = 78/85 (92%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||| ||||| |||||||||| |||||| Sbjct 2463929 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCGAGAGGGAGC 2463870 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 2463869 GTGGGTTCGAACCCCACACCTGACA 2463845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556837787727440