Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq2605 107 2e-18 seq603 107 2e-18 >seq2605 Length=276952 Score = 107 bits (118), Expect = 2e-18 Identities = 181/260 (70%), Gaps = 3/260 (1%) Strand=Plus/Plus Query 111170 TTTATAAGA--GTTTAAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTAC 111227 ||| ||||| ||| | |||||||||||| || ||||| | || || || ||||| || Sbjct 241878 TTTGTAAGATTGTTCAGCAATGCAAATTTTCGTAAAAACCCTTACGGGTAAGACCATCAC 241937 Query 111228 CGTGGAAACGGAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGA 111287 | || || || ||| || ||| || || || |||||| || || || Sbjct 241938 TCTTGAGGTTGAGCCTTCGGATACTATTGAACATGTTAAGGCCAAAATTCAAGATAAGGA 241997 Query 111288 AGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAA 111347 ||| ||||| |||||||| | || |||| ||| || || |||||||||||| | Sbjct 241998 AGGAATTCCCCCTGATCAACAGCGTCTAATTTTTGCCGGAAAGCAATTGGAAGATGGTCG 242057 Query 111348 AACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCG 111407 || |||| || |||||||| || ||||| |||||| | |||||||| | ||||| | Sbjct 242058 CACATTGGCTGACTATAATATTCAGAAAGAGTCTACATTGCATTTAGTACTTCGTCTTAG 242117 Query 111408 CGGTGGCAATAAATAAACGT 111427 |||||| ||| |||||| Sbjct 242118 AGGTGGC-GCAAAGAAACGT 242136 >seq603 Length=780983 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 ||||||||||| || || || || |||| ||||| ||||| || |||| ||||| Sbjct 745567 AAAATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCA 745626 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 |||| || ||| | || ||| || ||| ||||||||||| | ||| ||| Sbjct 745627 TCCGATACTATTGAAAATGTTAAAGCTAAGATTCAAGACAAAGAAGGAATCCCCCCAGAT 745686 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 |||||| | | || | ||| || |||||| ||||||| ||| || ||||||| Sbjct 745687 CAACAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGCACTCTGTCCGATTAC 745746 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || || || || |||||||| ||||| || | ||||| || ||||||| Sbjct 745747 AACATCCAGAAGGAGTCTACACTTCATTTGGTTCTTCGTCTACGTGGTGGCA 745798 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| || || || || | || ||||||||||| ||| ||||| || ||| Sbjct 747553 ATGCAAATCTTCGTTAAGACCCTCACTGGCAAAACCATCACCTTGGAAGTCGAGCCCTCA 747612 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || || || || || ||||||||| |||| |||||| Sbjct 747613 GATACCATTGAGAATGTTAAGGCTAAGATCCAAGATAAAGAAGGCATTCCACCAGATCAA 747672 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | |||| ||| ||||| ||| | || ||| ||| || |||| || ||| Sbjct 747673 CAACGTTTGATTTTTGCCGGCAAGCAACTTGAGGATGGACGTACTTTGTCCGACTACAAT 747732 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111414 ||||| || ||||| ||||| ||||| ||| | ||||| ||||| ||| Sbjct 747733 ATACAGAAGGAATCGACACTCCATTTGGTGCTACGTCTTCGCGGAGGC 747780 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| ||||| |||||||| |||| || |||||||| || |||| || || | Sbjct 745798 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 745857 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || ||| |||||| || || ||||| | ||| |||||| Sbjct 745858 GATACCATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 745917 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | |||| || |||||||| ||||| ||| || || |||| |||||| Sbjct 745918 CAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAAT 745977 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || ||||| || ||||||||||| | || | || ||||| Sbjct 745978 ATTCAGAAGGAATCCACTCTACATTTAGTTCTACGCTTACGTGGTGG 746024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423022954925200