Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq3107 295 6e-75 seq603 163 2e-35 seq2605 120 3e-22 >seq3107 Length=1323484 Score = 295 bits (326), Expect = 6e-75 Identities = 1032/1579 (65%), Gaps = 58/1579 (4%) Strand=Plus/Plus Query 128779 TTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCT 128838 || ||||| ||||||| ||||| | || || || || || |||||||| |||||||| Sbjct 934418 TTATCCACAGTAAATTGTATAGCATTTGCAGCTGGTTTCGTACGCAAATAATACATGCCC 934477 Query 128839 GTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGT 128898 || || | ||| ||||| | | || || | || | | | ||| |||| Sbjct 934478 GTCTTGAGACCTGCCTTCCAGCCGAAGAAATGTATAGAAGTAAGCTTACCATAGTTGGGC 934537 Query 128899 TGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCC 128958 | | || || || || || ||||||||||| || || | |||||||| |||||| Sbjct 934538 TCAGCCACGTGTATGTTGAACGACTGACTTTGATCGATGAATGCACCGCGATCTGCAGCC 934597 Query 128959 ATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGT 129018 || || | ||||||| || ||||| || |||||||| || || | | ||| Sbjct 934598 ATTTTGATTGATGTTTTCACGGAAATCTCCCAAACAGTTTTGTATAGATCGCGTATGTGC 934657 Query 129019 TTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCATC 129078 | |||||| |||||| || || | | |||| | | ||||| || || ||| Sbjct 934658 TGTGGTATGGATTCAATATTTTGTATGGAGCCGCGACTGGTTATAATATTATTCTTCATA 934717 Query 129079 TGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTACTTGA 129138 | || | ||||| || | | | | |||| ||||| | |||| |||||| Sbjct 934718 TCATCATCCCACAAACCCAACTCGGTTAGATCGCGCAACAAGTGATGATTTACAACTTGA 934777 Query 129139 AAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTCA 129198 || ||||| | | || || || ||||| ||| ||| | || ||||| || ||| Sbjct 934778 AATTCACCTGAAAGCACACGACGTGTATAAATATTGGAAGTGTATGGTTCAAATGACTCA 934837 Query 129199 TTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAA-AGCGAGTT 129257 |||||||| | ||||| || |||| || || |||||| || | ||| | ||||| Sbjct 934838 TTGTTGCCCATAATTTGTGCTGTTGAAGCAGTTGGCATGGGCGCAA-GCAGTAAAGAGTT 934896 Query 129258 TCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGAT--GTG 129315 || | ||| || || || || | | || |||| ||||| | ||| | ||| || Sbjct 934897 GCGGACACCATGTTGCTTTATTTTCTCCTTCAATTCGGTCCAATTCCAAA--GATCAGTT 934954 Query 129316 GGTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAAA--GT 129373 ||||| | || ||||| ||| || || | |||||| ||| |||| || | || Sbjct 934955 GGTGTTTTATCCCACATGTCATACTGTAGAATACCCTTACTAACGGG--TGAACCTTCGT 935012 Query 129374 AGGAATCGTGCACGCCGTAAGCTTTT--GCCAATTCGCAACTCGCTTCCAATGCGCCAAA 129431 | | || | ||| ||| |||| || ||||||||||| |||||||| |||||| | Sbjct 935013 AAGTTTCATAGGGGCC--AAGTTTTTCGGCTAATTCGCAACTAGCTTCCAAGGCGCCATA 935070 Query 129432 ATAAATTGTTTCGGCAAT-TTTGGTG-TTCAACACTTTGGCCTGGTCGCTTTCGTACGGC 129489 |||||||||||| ||| |||| || ||||| | | || | || |||||||| || Sbjct 935071 GTAAATTGTTTCG--AATATTTGCTGATTCAAAAGTAATGCTTCTTCACTTTCGTATGGA 935128 Query 129490 ATACGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGT 129549 ||||| | || | ||| || ||||| || | || | ||||||||| |||||| Sbjct 935129 TAACGCATTAAAATTAAAGCGTCAGCAAAACCCTGTACTCCAATACCGATGGGACGATGT 935188 Query 129550 TTTCTATTGGATTTTTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTT 129609 | ||| ||||| |||| | |||||||| | || |||||||| ||||| || Sbjct 935189 CTGAAATTCGATTTCCTTGCCTCCGGTAAGGGATAATGATTAATGTCTATTATTTTATTC 935248 Query 129610 AAATT-CTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTAC 129668 ||||| | || || |||| || || | ||| | | ||| | |||| | | Sbjct 935249 AAATTACGTGTA-ACGGTTTTGGTGACCTCTTTGAGGCGCTTAAAGTCGTACGTTTTTTC 935307 Query 129669 ATCGATGTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTT 129728 | ||| |||||| ||| | || || ||||| ||||| || || || | Sbjct 935308 G--GGTGT-GACAAACATATTCAACGCGATTGAAGCCAAGTTGCACACAGCTACCTCATC 935364 Query 129729 TTTGTCACTG--TACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAA 129786 || ||| || || |||||||||| || ||||||||| ||||| || || | | Sbjct 935365 AG-GTG-CTGAATATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTACCAACA 935422 Query 129787 TGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTT 129846 | || ||||||||| || || ||||||||||| |||| |||||| || ||||| || Sbjct 935423 TTCTGTTGATTACTCTTTCGATTACAAGCATCTTTATACAACATGTATGGTGTGCCGGTC 935482 Query 129847 TCGACTTGCGTTTCGACAATGGTCCTGAAC--AAGTCTC-GAGCCTTGATCTGTCTTACA 129903 || ||||||| ||| | |||| || ||| ||| || | || || | || ||||| Sbjct 935483 TCCACTTGCGATTCAATAATG---CTAAACCAAAGACTTTGTGCTTTTA-CTTTCTTA-- 935536 Query 129904 AATTTGCCACAT--TTC----TCGTATGCCACATACAGTTGTTCAAATTCTGAGCCGTGT 129957 || ||| | ||| || ||| || ||| | || ||| || ||| || | Sbjct 935537 ---TTAGCACGTCCTTCCTGTTCATATTTCAGATATAATTTTTCGAACTCTTCACCCCAT 935593 Query 129958 ACGG--TGTCGAGCAACGGCGATTCACGCGGACACATCAAACTCCACATTCCATCCGCTT 130015 || ||| || | || | | | |||||||| | ||| | ||| |||| Sbjct 935594 ACTTCATGTAGACCG--GGACACTTGTGTGGACACATTAGCGACCAGTCTTCATTGGCTT 935651 Query 130016 CGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTC--GCGCTTT 130073 | || ||||||||||| | ||| |||| ||||| || || |||||||||| |||| | Sbjct 935652 CTACACGTTTCATAAATAGATCAGGTATCCACAAAGCATAAAACAAATCTCTGGCGCGAT 935711 Query 130074 TCTATCCTCGGCACCCA-TGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCC 130132 || | || |||| |||| |||| || | || | | |||| || || |||| Sbjct 935712 GCTCTTCTTT---CCCAGTGTTTTTCTTCAAATCCAAAAATTGGAAAATATCAGCATGCC 935768 Query 130133 ACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTT---GCCCCCTTGGTCAACGTGGC 130189 | ||||| | || || || | |||||| ||||| ||| ||||| || || | || Sbjct 935769 ATGGTTCCAGGTAGATGGCAAATGCGCCTGGACGTTTACCGCCACCTTGATCCACATAGC 935828 Query 130190 GCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGC 130249 | | |||| ||| | ||||||||||| | | |||| ||||| | ||||| ||||| | Sbjct 935829 GTGCTACATTATTGAACACTCGCAACATAGGCACCAAACCGTTTGATGTGCCATTTGTAC 935888 Query 130250 TCTCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAA 130309 | |||| | |||| || || | | ||| ||| | ||||| || || || || Sbjct 935889 CCGCAATTGCAGTGCCTTTTGCACGTATGCAATGTACGTTCAGACCAATACCCCCAGCAG 935948 Query 130310 ATTTTGATATCAACGCGCA 130328 |||| || ||||| || || Sbjct 935949 ATTTGGAAATCAATGCACA 935967 >seq603 Length=780983 Score = 163 bits (180), Expect = 2e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || |||||||| || || ||||| ||||| | || || || | || Sbjct 745798 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 745857 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || ||||| ||||||||||| ||||| || || || || |||||| Sbjct 745858 GATACCATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 745917 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || || ||||||||||| |||||| ||||| | ||||| || || Sbjct 745918 CAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAAT 745977 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || |||||||| ||||||||||| | || || || || ||| Sbjct 745978 ATTCAGAAGGAATCCACTCTACATTTAGTTCTACGCTTACGTGGTGGT 746025 Score = 129 bits (142), Expect = 5e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || ||||| |||| | ||||| || | | || ||| | || || ||||| Sbjct 747349 ACTGGCAAAACCATCACCTTGGAAGTTGAGCCATCTGACACCATTGAGAATGTCAAAGCC 747408 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 ||||| ||||| ||||| || || ||||| |||||||||||| | || ||||||||||| Sbjct 747409 AAAATCCAAGATAAGGAAGGAATCCCACCAGATCAACAACGTTTGATTTTTGCCGGCAAG 747468 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || || |||||| || ||| | ||||| ||||||||||| || ||||| ||| | || Sbjct 747469 CAATTGGAGGATGGACGTACCTTGTCCGACTACAACATTCAGAAGGAATCAACCCTCCAC 747528 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| | || ||||| || ||| Sbjct 747529 TTAGTCCTTCGCTTGCGTGGTGGT 747552 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||||| || || || || || || || || || ||||||| || || ||| | Sbjct 745567 AAAATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCA 745626 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 ||||||| | || || | ||| || ||||||||||| || || || || || ||| Sbjct 745627 TCCGATACTATTGAAAATGTTAAAGCTAAGATTCAAGACAAAGAAGGAATCCCCCCAGAT 745686 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||||||| | || |||||||| ||||| | || || ||||| | ||||||||| Sbjct 745687 CAACAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGCACTCTGTCCGATTAC 745746 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTT 22428 ||||| || || || || || | ||||| ||| Sbjct 745747 AACATCCAGAAGGAGTCTACACTTCATTTGGTT 745779 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || ||||| || | || || ||||| |||| | ||||| || || | Sbjct 747553 ATGCAAATCTTCGTTAAGACCCTCACTGGCAAAACCATCACCTTGGAAGTCGAGCCCTCA 747612 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || || || ||||| || || || |||||||| |||||| Sbjct 747613 GATACCATTGAGAATGTTAAGGCTAAGATCCAAGATAAAGAAGGCATTCCACCAGATCAA 747672 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||||||||| || | |||||| || || | ||||| ||||| Sbjct 747673 CAACGTTTGATTTTTGCCGGCAAGCAACTTGAGGATGGACGTACTTTGTCCGACTACAAT 747732 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || ||||| || | ||||| || | || | |||||||| Sbjct 747733 ATACAGAAGGAATCGACACTCCATTTGGTGCTACGTCTTCGCGGAGG 747779 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || |||||||||||||| |||||||| | || || || || ||| | || Sbjct 746026 ATGCAAATCTTCGTTAAAACTTTAACGGGTAAAACAATTACGCTGGAGGTTGAACCTTCC 746085 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCC 22328 ||||| | || | | ||| ||||||||| ||||||||||||||||| Sbjct 746086 GATACAATTGAAAACGTTAAAGCAAAAATTCAGGACAAGGAGGGTATTCC 746135 >seq2605 Length=276952 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| | || ||||| || |||||||||| || || | | Sbjct 241897 ATGCAAATTTTCGTAAAAACCCTTACGGGTAAGACCATCACTCTTGAGGTTGAGCCTTCG 241956 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || ||||||||||| ||||| || ||||| || |||||| Sbjct 241957 GATACTATTGAACATGTTAAGGCCAAAATTCAAGATAAGGAAGGAATTCCCCCTGATCAA 242016 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || |||||||| || || || || ||| ||||| | | || || || Sbjct 242017 CAGCGTCTAATTTTTGCCGGAAAGCAATTGGAAGATGGTCGCACATTGGCTGACTATAAT 242076 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||| ||||| || || | |||||||| Sbjct 242077 ATTCAGAAAGAGTCTACATTGCATTTAGT 242105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419711088371890