Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq603 118 9e-22 seq1558 109 5e-19 seq2605 91.5 1e-13 >seq603 Length=780983 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | ||| ||||| | ||||| || || || |||||||||||| Sbjct 745799 ATGCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCG 745740 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| || ||||| ||||||||||| || |||| | ||| ||||| || || Sbjct 745739 GACAGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGG 745680 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||||||||| |||||| ||| | | ||||| || |||| | ||| Sbjct 745679 GGGATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCA 745620 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || ||||| |||| || || || || || ||||| Sbjct 745619 ACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 745570 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||||| | | ||||||||||| || ||||| || ||||| || || ||| Sbjct 746027 ATACCACCACGTAAGCGTAGAACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCG 745968 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| || | ||||| |||||| | || | ||| ||||| || || Sbjct 745967 GACAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGG 745908 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| || || ||| || ||| | | |||| ||| |||| | || Sbjct 745907 GGGATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCA 745848 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| || | ||||| || |||| |||||| || |||||||||||| Sbjct 745847 ACCTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCATG 745797 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || ||||| | || ||||| || || || ||||| ||| || |||||| ||| ||| Sbjct 747761 ACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGACAAAGTACGTCCATCCTCA 747702 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 ||||| || || || | || | ||| ||||| || || |||||||||||||| || Sbjct 747701 AGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCTTTATCTTGG 747642 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 ||||| || | | |||| ||| || | || ||||| |||| ||| | |||||| Sbjct 747641 ATCTTAGCCTTAACATTCTCAATGGTATCTGAGGGCTCGACTTCCAAGGTGATGGTTTTG 747582 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || || || || || || || ||||| Sbjct 747581 CCAGTGAGGGTCTTAACGAAGATTTGCAT 747553 >seq1558 Length=2163639 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | || ||| ||||| | || || || ||||| |||||||| ||| Sbjct 2034177 ATACCACCACGAAGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCG 2034118 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || ||| |||||| | ||| || || ||| |||| | ||||||||| || || Sbjct 2034117 GACAAGGTGCGACCATCTTCCAATTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGG 2034058 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| ||||| || || || ||| | | ||| | |||||| | | ||| Sbjct 2034057 GGGATGCCCTCTTTATCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCG 2033998 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || || || | ||||| || ||||||||||| Sbjct 2033997 ACCTCTAAGGTAATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 2033948 >seq2605 Length=276952 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 |||||||| | ||||| ||||| ||||| || || || || || ||| |||||| Sbjct 242105 ACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATCTTCC 242046 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 | ||| || || || | || ||||||||||| || || ||||| ||||| || || | Sbjct 242045 AATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGGGGAATTCCTTCCTTATCTTGA 241986 Query 114294 ATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 || ||| | ||| | ||||||| || || | | || || || | || | || || Sbjct 241985 AT-TTTGGCCTTAACATGTTCAATAGTATCCGAAGGCTCAACCTCAAGAGTGATGGTCTT 241927 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTAA 114389 || || || |||||||| ||||| ||||| ||| || Sbjct 241926 ACCCGTAAGGGTTTTTACGAAAATTTGCATTGCTGAA 241890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420117471997272