Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq603 118 9e-22
seq1558 109 5e-19
seq2605 91.5 1e-13
>seq603
Length=780983
Score = 118 bits (130), Expect = 9e-22
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || |||||||| | | ||| ||||| | ||||| || || || ||||||||||||
Sbjct 745799 ATGCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCG 745740
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| ||| || ||||| ||||||||||| || |||| | ||| ||||| || ||
Sbjct 745739 GACAGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGG 745680
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || ||||||||||| |||||| ||| | | ||||| || |||| | |||
Sbjct 745679 GGGATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCA 745620
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| || | || ||||| |||| || || || || || |||||
Sbjct 745619 ACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 745570
Score = 105 bits (116), Expect = 6e-18
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||||| | | ||||||||||| || ||||| || ||||| || || |||
Sbjct 746027 ATACCACCACGTAAGCGTAGAACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCG 745968
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| || || ||| || | ||||| |||||| | || | ||| ||||| || ||
Sbjct 745967 GACAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGG 745908
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || ||||| || || ||| || ||| | | |||| ||| |||| | ||
Sbjct 745907 GGGATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCA 745848
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383
|| |||| || | ||||| || |||| |||||| || ||||||||||||
Sbjct 745847 ACCTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCATG 745797
Score = 98.7 bits (108), Expect = 8e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233
|| ||||| | || ||||| || || || ||||| ||| || |||||| ||| |||
Sbjct 747761 ACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGACAAAGTACGTCCATCCTCA 747702
Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293
||||| || || || | || | ||| ||||| || || |||||||||||||| ||
Sbjct 747701 AGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCTTTATCTTGG 747642
Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353
||||| || | | |||| ||| || | || ||||| |||| ||| | ||||||
Sbjct 747641 ATCTTAGCCTTAACATTCTCAATGGTATCTGAGGGCTCGACTTCCAAGGTGATGGTTTTG 747582
Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || || || || || || || |||||
Sbjct 747581 CCAGTGAGGGTCTTAACGAAGATTTGCAT 747553
>seq1558
Length=2163639
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | || ||| ||||| | || || || ||||| |||||||| |||
Sbjct 2034177 ATACCACCACGAAGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCG 2034118
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| || ||| |||||| | ||| || || ||| |||| | ||||||||| || ||
Sbjct 2034117 GACAAGGTGCGACCATCTTCCAATTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGG 2034058
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| ||||| ||||| || || || ||| | | ||| | |||||| | | |||
Sbjct 2034057 GGGATGCCCTCTTTATCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCG 2033998
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | ||| | || || || || | ||||| || |||||||||||
Sbjct 2033997 ACCTCTAAGGTAATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 2033948
>seq2605
Length=276952
Score = 91.5 bits (100), Expect = 1e-13
Identities = 152/217 (70%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233
|||||||| | ||||| ||||| ||||| || || || || || ||| ||||||
Sbjct 242105 ACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATCTTCC 242046
Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293
| ||| || || || | || ||||||||||| || || ||||| ||||| || || |
Sbjct 242045 AATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGGGGAATTCCTTCCTTATCTTGA 241986
Query 114294 ATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352
|| ||| | ||| | ||||||| || || | | || || || | || | || ||
Sbjct 241985 AT-TTTGGCCTTAACATGTTCAATAGTATCCGAAGGCTCAACCTCAAGAGTGATGGTCTT 241927
Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTAA 114389
|| || || |||||||| ||||| ||||| ||| ||
Sbjct 241926 ACCCGTAAGGGTTTTTACGAAAATTTGCATTGCTGAA 241890
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420117471997272
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |