Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq603 145 2e-29
seq2605 127 5e-24
seq2851 104 6e-17
>seq603
Length=780983
Score = 145 bits (160), Expect = 2e-29
Identities = 177/239 (74%), Gaps = 7/239 (3%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| || || | ||| || | ||||| || || || ||||| || || |
Sbjct 745800 CATG-CCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAAT 745742
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
||| || |||||||||||||| | |||||| || || ||||| | ||| |||||| |
Sbjct 745741 CGGACAGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGA---T 745685
Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418
||||| ||||||||||| || || || || ||||| || ||||| |||| |||| |
Sbjct 745684 CTGGGGGGATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATG 745625
Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477
||| || || || ||||| ||||| || |||| ||||| ||||| || |||||| ||
Sbjct 745624 GTTCAACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTTG 745566
Score = 132 bits (146), Expect = 1e-25
Identities = 147/195 (75%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| || || ||||||||||||| || |||||||| || || || ||||| || |||||
Sbjct 745989 TTCCTTCTGAATATTATAGTCGGACAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAA 745930
Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398
|||| ||| |||||| |||||| |||||||| ||||| || ||||| ||||| ||
Sbjct 745929 AATCAAACGTTGTTGA---TCTGGGGGGATTCCTTCCTTATCTTGAATTTTAGCTTTGAC 745873
Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458
|| || || | |||| | || || || | ||||| || || || |||| ||| ||
Sbjct 745872 ATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTT 745813
Query 288459 GACGAATATCTGCAT 288473
|||||| ||||||||
Sbjct 745812 GACGAAAATCTGCAT 745798
Score = 95.1 bits (104), Expect = 3e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| || || ||||| ||||||| | || ||||| || || | ||| || || || ||
Sbjct 747744 TTCCTTCTGTATATTGTAGTCGGACAAAGTACGTCCATCCTCAAGTTGCTTGCCGGCAAA 747685
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
|||| ||| |||||| ||| || ||||||||||| ||||| || || || || ||
Sbjct 747684 AATCAAACGTTGTTGATCTGGTGGAATGCCTTCTTTATCTTGGATCTTAGCCTTAACATT 747625
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| || | ||| | || ||||| | ||||| || || || || || ||||| ||
Sbjct 747624 CTCAATGGTATCTGAGGGCTCGACTTCCAAGGTGATGGTTTTGCCAGTGAGGGTCTTAAC 747565
Query 288462 GAATATCTGCAT 288473
||| || |||||
Sbjct 747564 GAAGATTTGCAT 747553
Score = 89.7 bits (98), Expect = 1e-12
Identities = 126/177 (71%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| || || || || ||||||| | || ||||| || || ||||| || || || ||
Sbjct 747516 TTCCTTCTGAATGTTGTAGTCGGACAAGGTACGTCCATCCTCCAATTGCTTGCCGGCAAA 747457
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
|||| ||| |||||| |||||||||||| ||||| |||||||| ||||| || ||
Sbjct 747456 AATCAAACGTTGTTGATCTGGTGGGATTCCTTCCTTATCTTGGATTTTGGCTTTGACATT 747397
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458
|| || | || | || ||||| | ||||| || || || || || |||||
Sbjct 747396 CTCAATGGTGTCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCAGTGAGGGTCTT 747340
>seq2605
Length=276952
Score = 127 bits (140), Expect = 5e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| | || | |||||| | ||| | || ||||| || ||||||||||| ||
Sbjct 242123 CCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCC 242064
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| ||||| || ||||| ||||| ||||| || || || |||||||||||| | ||
Sbjct 242063 AATGTGCGACCATCTTCCAATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGGGGA 242004
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|||||||| ||||| || ||||| || || || | ||| |||| ||| | || ||
Sbjct 242003 ATTCCTTCCTTATCTTGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGCTCAACC 241944
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
|| || ||||| ||||| || || || || || ||||| || ||||||
Sbjct 241943 TCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAAAATTTGCATT 241896
>seq2851
Length=1548428
Score = 104 bits (114), Expect = 6e-17
Identities = 220/324 (68%), Gaps = 16/324 (5%)
Strand=Plus/Minus
Query 72506 TGCAAAGTTGTACGCTTATTGGATCTGTAAAAATTACCGTGAGTCGTATAACATGTATGT 72565
||| ||| |||||| | |||||| || || |||||||| | ||||| |||||||
Sbjct 769484 TGCCAAGATGTACGGCTTTTGGATTGTTATTAACTACCGTGAAGCATATAATATGTATGC 769425
Query 72566 ATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACA--GAGGCCATCAGTTCGTGACT 72623
|| || || | ||||||||||| |||| || |||| | | ||||||||
Sbjct 769424 CTGTAATGGCATATTGTTCAATCACGAA--TCCCCACGTCGAGGTGAAAATTTCGTGACA 769367
Query 72624 CGTAAAATCACGAAGGTGGTCGCGAATAT-TTTCAATGGTGTCGAAAAATGCATG-TATC 72681
|| ||||| ||| ||| ||||| || ||||| || | || || || | ||
Sbjct 769366 CGCAAAATAACGCGTTCGGTAGCGAAAATATTTCA------TCAACAATTGGATTCTTTC 769313
Query 72682 ----TCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCA 72737
| |||||| | || | ||| | |||||||| | || | ||||||||| || ||
Sbjct 769312 GAATTGGGTAATCTCGACTCGAAACGTGATTGGGGTCACGCAATGGATTACGTGGAGGCC 769253
Query 72738 ATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGGGAAAACA 72797
|||||| ||||| ||||| || | || | ||| | ||||||||| || || ||||
Sbjct 769252 ATGTGGATGATGTTGCAATTGGAAAGACCTGCTGATTTTGTGATTGCCACCGGTGAAACG 769193
Query 72798 ACGAGCGTTCGTGAGTTCGTGAAA 72821
||||||||||| || ||| ||
Sbjct 769192 CACAGCGTTCGTGAATTTGTGGAA 769169
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179604432051468
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |