Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq603 145 2e-29 seq2605 127 5e-24 seq2851 104 6e-17 >seq603 Length=780983 Score = 145 bits (160), Expect = 2e-29 Identities = 177/239 (74%), Gaps = 7/239 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | ||| || | ||||| || || || ||||| || || | Sbjct 745800 CATG-CCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAAT 745742 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || |||||||||||||| | |||||| || || ||||| | ||| |||||| | Sbjct 745741 CGGACAGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGA---T 745685 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 ||||| ||||||||||| || || || || ||||| || ||||| |||| |||| | Sbjct 745684 CTGGGGGGATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATG 745625 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||| || || || ||||| ||||| || |||| ||||| ||||| || |||||| || Sbjct 745624 GTTCAACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTTG 745566 Score = 132 bits (146), Expect = 1e-25 Identities = 147/195 (75%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || ||||||||||||| || |||||||| || || || ||||| || ||||| Sbjct 745989 TTCCTTCTGAATATTATAGTCGGACAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAA 745930 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||| ||| |||||| |||||| |||||||| ||||| || ||||| ||||| || Sbjct 745929 AATCAAACGTTGTTGA---TCTGGGGGGATTCCTTCCTTATCTTGAATTTTAGCTTTGAC 745873 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || | |||| | || || || | ||||| || || || |||| ||| || Sbjct 745872 ATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTT 745813 Query 288459 GACGAATATCTGCAT 288473 |||||| |||||||| Sbjct 745812 GACGAAAATCTGCAT 745798 Score = 95.1 bits (104), Expect = 3e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || ||||| ||||||| | || ||||| || || | ||| || || || || Sbjct 747744 TTCCTTCTGTATATTGTAGTCGGACAAAGTACGTCCATCCTCAAGTTGCTTGCCGGCAAA 747685 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| ||| |||||| ||| || ||||||||||| ||||| || || || || || Sbjct 747684 AATCAAACGTTGTTGATCTGGTGGAATGCCTTCTTTATCTTGGATCTTAGCCTTAACATT 747625 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||| | || ||||| | ||||| || || || || || ||||| || Sbjct 747624 CTCAATGGTATCTGAGGGCTCGACTTCCAAGGTGATGGTTTTGCCAGTGAGGGTCTTAAC 747565 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 747564 GAAGATTTGCAT 747553 Score = 89.7 bits (98), Expect = 1e-12 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || || || ||||||| | || ||||| || || ||||| || || || || Sbjct 747516 TTCCTTCTGAATGTTGTAGTCGGACAAGGTACGTCCATCCTCCAATTGCTTGCCGGCAAA 747457 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| ||| |||||| |||||||||||| ||||| |||||||| ||||| || || Sbjct 747456 AATCAAACGTTGTTGATCTGGTGGGATTCCTTCCTTATCTTGGATTTTGGCTTTGACATT 747397 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || | || | || ||||| | ||||| || || || || || ||||| Sbjct 747396 CTCAATGGTGTCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCAGTGAGGGTCTT 747340 >seq2605 Length=276952 Score = 127 bits (140), Expect = 5e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | || | |||||| | ||| | || ||||| || ||||||||||| || Sbjct 242123 CCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCC 242064 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || ||||| ||||| ||||| || || || |||||||||||| | || Sbjct 242063 AATGTGCGACCATCTTCCAATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGGGGA 242004 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||| || ||||| || || || | ||| |||| ||| | || || Sbjct 242003 ATTCCTTCCTTATCTTGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGCTCAACC 241944 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || ||||| ||||| || || || || || ||||| || |||||| Sbjct 241943 TCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAAAATTTGCATT 241896 >seq2851 Length=1548428 Score = 104 bits (114), Expect = 6e-17 Identities = 220/324 (68%), Gaps = 16/324 (5%) Strand=Plus/Minus Query 72506 TGCAAAGTTGTACGCTTATTGGATCTGTAAAAATTACCGTGAGTCGTATAACATGTATGT 72565 ||| ||| |||||| | |||||| || || |||||||| | ||||| ||||||| Sbjct 769484 TGCCAAGATGTACGGCTTTTGGATTGTTATTAACTACCGTGAAGCATATAATATGTATGC 769425 Query 72566 ATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACA--GAGGCCATCAGTTCGTGACT 72623 || || || | ||||||||||| |||| || |||| | | |||||||| Sbjct 769424 CTGTAATGGCATATTGTTCAATCACGAA--TCCCCACGTCGAGGTGAAAATTTCGTGACA 769367 Query 72624 CGTAAAATCACGAAGGTGGTCGCGAATAT-TTTCAATGGTGTCGAAAAATGCATG-TATC 72681 || ||||| ||| ||| ||||| || ||||| || | || || || | || Sbjct 769366 CGCAAAATAACGCGTTCGGTAGCGAAAATATTTCA------TCAACAATTGGATTCTTTC 769313 Query 72682 ----TCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCA 72737 | |||||| | || | ||| | |||||||| | || | ||||||||| || || Sbjct 769312 GAATTGGGTAATCTCGACTCGAAACGTGATTGGGGTCACGCAATGGATTACGTGGAGGCC 769253 Query 72738 ATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGGGAAAACA 72797 |||||| ||||| ||||| || | || | ||| | ||||||||| || || |||| Sbjct 769252 ATGTGGATGATGTTGCAATTGGAAAGACCTGCTGATTTTGTGATTGCCACCGGTGAAACG 769193 Query 72798 ACGAGCGTTCGTGAGTTCGTGAAA 72821 ||||||||||| || ||| || Sbjct 769192 CACAGCGTTCGTGAATTTGTGGAA 769169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179604432051468