Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq3107 154 1e-32 seq2605 120 3e-22 seq603 109 5e-19 >seq3107 Length=1323484 Score = 154 bits (170), Expect = 1e-32 Identities = 553/853 (65%), Gaps = 25/853 (3%) Strand=Plus/Plus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTG--TATTGCACAATTTCTGCGC 154644 || ||||||||||| || || | || |||| | ||| |||| ||||||||| | | Sbjct 935336 GAAGCCAAGTTGCACACAGCTACCTCATCAGG--TGCTGAATATTCCACAATTTCGGTAC 935393 Query 154645 ACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATT-CGATTT-GATGTTGCATGC 154702 | |||||||| || ||| || || | || | ||||| | ||| ||| | || || Sbjct 935394 ATAAATTACTACACTTAATTGTACCAACATTCTGTTGATTACTCTTTCGAT--TACAAGC 935451 Query 154703 GTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAAA 154762 ||||| ||||| ||||| || ||||| || |||||||| | ||||||||| || ||| Sbjct 935452 ATCTTTATACAACATGTATGGTGTGCCGGTCTCCACTTGCGATTCAATAAT---GCTAAA 935508 Query 154763 C---AGACTTCGCGCCTCAACTTGACAAGTAAATCGATTTTCGCTCTCATATTGTTCGTA 154819 | |||||| | || | |||| | || || ||| ||||||| || Sbjct 935509 CCAAAGACTTTGTGCTTTTACTTTCTTATTAGCACGTCCTTCCTGTTCATATTTCAGATA 935568 Query 154820 CAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGGACACAT 154879 | |||||| |||||| || | || || | ||||||||| || |||||||| Sbjct 935569 TAATTTTTCGAACTCTTCACCCCATACTTCATGTAGACCGGGACACTTGTGTGGACACAT 935628 Query 154880 CAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGC 154939 | ||||| ||| || || ||| ||||||||||| | ||| || | ||||||||| Sbjct 935629 TAGCGACCAGTCTTCATTGGCTTCTACACGTTTCATAAATAGATCAGGTATCCACAAAGC 935688 Query 154940 GTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAA 154999 || |||||||| | || | ||||| || ||||| ||| |||| |||||| Sbjct 935689 ATAAAACAAATCTCTGGCGCGATGCTCTTCTTTCCCAGTGTTTTTCTTCAAATCCAAAAA 935748 Query 155000 ATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGTTT--- 155056 | | || || || ||||| || || | || | ||| | |||||| ||||| Sbjct 935749 TTGGAAAATATCAGCATGCCATGGTTCCAGGTAGATGGCAAATGCGCCTGGACGTTTACC 935808 Query 155057 TCCTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCACGCC 155116 || ||||||||||| | || | ||||||| |||| ||||||| || ||| || Sbjct 935809 GCCACCTTGATCCACATAGCGTGCTACATTATTGAACACTCGCAACATAGGCACCAAACC 935868 Query 155117 GCTGGCCGTGCCGTTGGTGCCACGTATCGCGCTGCCGCGAGCACGCGCTTTATGAACATT 155176 | | | ||||| || || || || || |||| ||||| ||| || || Sbjct 935869 GTTTGATGTGCCATTTGTACCCGCAATTGCAGTGCCTTTTGCACGTATGCAATGTACGTT 935928 Query 155177 AACGCCCAAACCTCCGCCGTATTTAGATATTTGCGCACA---GTCCGCCAAAGTTTCGTA 155233 | || | ||| || | |||| || || ||||| | ||| | || | | Sbjct 935929 CAGACCAATACCCCCAGCAGATTTGGAAATCAATGCACATTGATGTGCCGATGT---GAA 935985 Query 155234 CATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAACACGAAGATAATTGAGGTTG 155293 || || | ||| || || || |||| | || || || || ||||| || || Sbjct 935986 AATCCCATCAATGGAATCGTCCACCATGGTCAGTAGAAAGCATGATGACAATTGCGGCTG 936045 Query 155294 AGGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACATTTTGTT-GGCGGTTA 155352 | | | || || |||| || ||| ||| || ||||| || ||| || | Sbjct 936046 CTTGGTGGCAGCAGCGAATAGCGTTGGAGAAGCATGCGTAAA-ATAACGTTCGGAAAGCA 936104 Query 155353 AGTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCGATCGCCACGCGCA 155412 ||||||| |||||||| || || || ||||| || ||||||||||| || || |||| Sbjct 936105 AGTTGTATGTTTCGATTGCTGCATCTATGTCTTCGCCATGTATACCGATGGCAACACGCA 936164 Query 155413 TCAGCATGTGTTG 155425 | | ||| || || Sbjct 936165 TTAACATATGCTG 936177 >seq2605 Length=276952 Score = 120 bits (132), Expect = 3e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| |||| ||| | || || ||||| ||||| || || || || | ||||| | || Sbjct 242109 AAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATC 242050 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | ||||| |||||| |||| || ||||| || || || ||||||||||| || || Sbjct 242049 TTCCAATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGGGGAATTCCTTCCTTATC 241990 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| ||||| ||| ||| || | ||||| | || || || | ||| | ||| Sbjct 241989 TTGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGCTCAACCTCAAGAGTGATGGT 241930 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| || || | ||||||||||||||||||||| Sbjct 241929 CTTACCCGTAAGGGTTTTTACGAAAATTTGCATT 241896 >seq603 Length=780983 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || | ||||| || || || || || ||||||||||| | | ||||| |||| Sbjct 745782 AAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAGAGTGCGTCCGTC 745723 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| || || || |||||| | || | || || || || || || ||||||||||| || Sbjct 745722 TTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTC 745663 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| | | || ||||| ||| || | ||||| | || || || | ||| | || Sbjct 745662 TTG-AATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGG 745604 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||||| ||||| || || ||||| ||||||||||| Sbjct 745603 TCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 745567 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | ||| | |||||||| || || || ||||| || | | || || | || Sbjct 747764 AGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGACAAAGTACGTCCATCC 747705 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| |||||||||||| |||| | || || || || || ||||| |||||||| ||| Sbjct 747704 TCAAGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCTTTATCT 747645 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | ||||| || || ||||| | || | ||| Sbjct 747644 TGGATCTTAGCCTTAACATTCTCAATGGTATCTGAGGGCTCGACTTCCAAGGTGATGGTT 747585 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | || || ||||| |||||||| Sbjct 747584 TTGCCAGTGAGGGTCTTAACGAAGATTTGCAT 747553 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || || | || |||| ||| | || ||||| || ||||| || || || | Sbjct 746025 ACCACCACGTAAGCGTAGAACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCGGA 745966 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || | ||| ||||| || |||| | || || || || || || Sbjct 745965 CAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGG 745906 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 |||||||| || ||||| ||||| ||||| ||| ||| | ||||| | || | Sbjct 745905 GATTCCTTCCTTATCTTGAATTTTA-GCTTTGACATTCTCAATGGTATCGGAAGGCTCAA 745847 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | ||| | ||| || || ||||||||||| |||||||| ||||| Sbjct 745846 CCTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 745798 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || ||||| | ||| |||| || | || ||||| || ||||||||||| || | Sbjct 747552 ACCACCACGCAAGCGAAGGACTAAGTGGAGGGTTGATTCCTTCTGAATGTTGTAGTCGGA 747493 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || | || || | |||||||||||| |||| | || || || || || || Sbjct 747492 CAAGGTACGTCCATCCTCCAATTGCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTGG 747433 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 |||||||| || ||||| | |||| ||||| ||| ||| | || ||| | || | Sbjct 747432 GATTCCTTCCTTATCTTGGA-TTTTGGCTTTGACATTCTCAATGGTGTCAGATGGCTCAA 747374 Query 64395 CTTCTACAGTTACGGTCTTGCCGGT 64419 |||| | || | ||| ||||| || Sbjct 747373 CTTCCAAGGTGATGGTTTTGCCAGT 747349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499624152178640