Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq603 116 3e-21
seq1558 104 2e-17
seq2605 96.9 2e-15
>seq603
Length=780983
Score = 116 bits (128), Expect = 3e-21
Identities = 168/237 (71%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
||||||| || | | | ||| |||||||| ||||| || || || ||||||||||||
Sbjct 745798 TGCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGG 745739
Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
||| | | ||||||| | |||||| || || | || ||||| ||||| || |
Sbjct 745738 ACAGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGG 745679
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
| |||||||| ||||| ||| || ||| ||| |||| ||||||||| ||| |
Sbjct 745678 GGATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAA 745619
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184
| || | || ||||| || || |||| || || || || |||||||| || ||||
Sbjct 745618 CCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTTGGAAA 745562
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| || || | || ||||||||| || || || || || || || || || |||
Sbjct 746024 CCACCACGTAAGCGTAGAACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCGGAC 745965
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| | | | || || || |||||||||||| | |||||||| ||||| || ||
Sbjct 745964 AGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGG 745905
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
||||||||||| || |||||| ||| ||| | || || |||||| | || ||
Sbjct 745904 ATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACC 745845
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || || |||||||| || |||| |||||| || ||||| |||||
Sbjct 745844 TCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 745798
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/214 (69%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| ||||| | | ||||| || ||||| || || || || |||||||| ||| |
Sbjct 747551 CCACCACGCAAGCGAAGGACTAAGTGGAGGGTTGATTCCTTCTGAATGTTGTAGTCG--G 747494
Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
| || || | || || ||||| ||||| || | |||||||| ||||| || ||
Sbjct 747493 ACAAGGTACGTCCATCCTCCAATTGCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTG 747434
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
| ||||||||||| || |||||| ||| ||| | || || || || || |
Sbjct 747433 GGATTCCTTCCTTATCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCAGATGGCTCAA 747374
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTT 15161
| || ||||| |||||||| || || || || ||
Sbjct 747373 CTTCCAAGGTGATGGTTTTGCCAGTGAGGGTCTT 747340
>seq1558
Length=2163639
Score = 104 bits (114), Expect = 2e-17
Identities = 153/215 (71%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCT 15024
||| ||||| ||||| || || ||||| |||||||| ||| || || || | |||
Sbjct 2034157 AACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCG--GACAAGGTGCGACCATCT 2034100
Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084
|| ||||| || || ||| | |||||||||||||| || || || || || || ||
Sbjct 2034099 TCCAATTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGGATGCCCTCTTTATCT 2034040
Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144
||||| ||| ||| |||| || || || | || || ||||||||||||||
Sbjct 2034039 TGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTAATGGTC 2033980
Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179
||||| || | ||||| || ||||| ||||| ||
Sbjct 2033979 TTACCAGTTAAGGTTTTGACGAAAATCTGCATTTT 2033945
>seq2605
Length=276952
Score = 96.9 bits (106), Expect = 2e-15
Identities = 149/211 (71%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025
|||||||| | ||||| ||||| || || || || || | ||| || | ||||
Sbjct 242105 ACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCA--GCCAATGTGCGACCATCTT 242048
Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085
| ||||| || || || | || | ||||||||| || |||||||||||||| ||
Sbjct 242047 CCAATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGGGGAATTCCTTCCTTATCTT 241988
Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145
||||||| || ||| ||| |||||||| | || || || | || ||||| |
Sbjct 241987 GAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGCTCAACCTCAAGAGTGATGGTCT 241928
Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|||| || || |||||||| |||||||||||
Sbjct 241927 TACCCGTAAGGGTTTTTACGAAAATTTGCAT 241897
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357377600006210
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |