Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq603 116 3e-21 seq1558 104 2e-17 seq2605 96.9 2e-15 >seq603 Length=780983 Score = 116 bits (128), Expect = 3e-21 Identities = 168/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | | | ||| |||||||| ||||| || || || |||||||||||| Sbjct 745798 TGCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGG 745739 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | ||||||| | |||||| || || | || ||||| ||||| || | Sbjct 745738 ACAGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGG 745679 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | |||||||| ||||| ||| || ||| ||| |||| ||||||||| ||| | Sbjct 745678 GGATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAA 745619 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184 | || | || ||||| || || |||| || || || || |||||||| || |||| Sbjct 745618 CCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTTGGAAA 745562 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || || | || ||||||||| || || || || || || || || || ||| Sbjct 746024 CCACCACGTAAGCGTAGAACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCGGAC 745965 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | || || || |||||||||||| | |||||||| ||||| || || Sbjct 745964 AGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGG 745905 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || |||||| ||| ||| | || || |||||| | || || Sbjct 745904 ATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACC 745845 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || |||||||| || |||| |||||| || ||||| ||||| Sbjct 745844 TCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 745798 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| ||||| | | ||||| || ||||| || || || || |||||||| ||| | Sbjct 747551 CCACCACGCAAGCGAAGGACTAAGTGGAGGGTTGATTCCTTCTGAATGTTGTAGTCG--G 747494 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || || | || || ||||| ||||| || | |||||||| ||||| || || Sbjct 747493 ACAAGGTACGTCCATCCTCCAATTGCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTG 747434 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | ||||||||||| || |||||| ||| ||| | || || || || || | Sbjct 747433 GGATTCCTTCCTTATCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCAGATGGCTCAA 747374 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTT 15161 | || ||||| |||||||| || || || || || Sbjct 747373 CTTCCAAGGTGATGGTTTTGCCAGTGAGGGTCTT 747340 >seq1558 Length=2163639 Score = 104 bits (114), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCT 15024 ||| ||||| ||||| || || ||||| |||||||| ||| || || || | ||| Sbjct 2034157 AACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCG--GACAAGGTGCGACCATCT 2034100 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || ||||| || || ||| | |||||||||||||| || || || || || || || Sbjct 2034099 TCCAATTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGGATGCCCTCTTTATCT 2034040 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||||| ||| ||| |||| || || || | || || |||||||||||||| Sbjct 2034039 TGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTAATGGTC 2033980 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 ||||| || | ||||| || ||||| ||||| || Sbjct 2033979 TTACCAGTTAAGGTTTTGACGAAAATCTGCATTTT 2033945 >seq2605 Length=276952 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025 |||||||| | ||||| ||||| || || || || || | ||| || | |||| Sbjct 242105 ACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCA--GCCAATGTGCGACCATCTT 242048 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | ||||| || || || | || | ||||||||| || |||||||||||||| || Sbjct 242047 CCAATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGGGGAATTCCTTCCTTATCTT 241988 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 ||||||| || ||| ||| |||||||| | || || || | || ||||| | Sbjct 241987 GAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGCTCAACCTCAAGAGTGATGGTCT 241928 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||| || || |||||||| ||||||||||| Sbjct 241927 TACCCGTAAGGGTTTTTACGAAAATTTGCAT 241897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357377600006210