Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq3107 232 6e-56 seq1558 127 2e-24 seq603 123 2e-23 seq2605 95.1 1e-14 >seq3107 Length=1323484 Score = 232 bits (256), Expect = 6e-56 Identities = 938/1459 (64%), Gaps = 44/1459 (3%) Strand=Plus/Minus Query 123237 ATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGC---AAACGCAAA 123293 ||| ||||||| | |||||| | | || | || || || || ||| ||||| | Sbjct 935856 ATGTTGCGAGTGTTCAATAATGTAGCACGCTATGTGGATCAAGGTGGCGGTAAACGTCCA 935797 Query 123294 GGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTA 123353 ||||| | || ||||| || ||||| ||||| | |||| | | | | ||||| |||| Sbjct 935796 GGCGCATTTGCCATCTACCTGGAACCATGGCATGCTGATATTTTCCAATTTTTGGATTTG 935737 Query 123354 AAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTA 123413 || |||| ||| ||||| | ||| | |||||||| || ||||| ||| || Sbjct 935736 AAGAAAAACACTGGGAAAGAAGAGCATCGCGCCAGAGATTTGTTTTATGCTTTGTGGATA 935677 Query 123414 CCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGAT 123473 || ||| | |||||| ||| ||| ||| | | | | |||||||| |||||||| | Sbjct 935676 CCTGATCTATTTATGAAACGTGTAGAAGCCAATGAAGACTGGTCGCTAATGTGTCCACAC 935617 Query 123474 CGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATAC 123533 ||||||||| | || || | || | |||| || | || || | |||| Sbjct 935616 AAGTGTCCCGGTCTACATGAAGTATGGGGTGAAGAGTTCGAAAAATTATATCTGAAATAT 935557 Query 123534 GAGCGCGAAGGCAAACAGGTTAGTCAG---GTTCCGGCAC---GTGATTTGTTCAAATTT 123587 || | ||||| || | || | || || |||| || || ||| | || Sbjct 935556 GAACAGGAAGG---ACGTGCTAATAAGAAAGTAAAAGCACAAAGTCTTTGGTTTAGCATT 935500 Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647 ||| ||| | ||||| || ||||| || || |||||| | || ||||| || || || Sbjct 935499 ATT---GAATCGCAAGTGGAGACCGGCACACCATACATGTTGTATAAAGATGCTTGTAAT 935443 Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATT 123707 | || | ||||| || | || ||||| || ||||||||| | || |||||||| Sbjct 935442 CGAAAGAGTAATCAACAGAATGTTGGTACAATTAAGTGTAGTAATTTATGTACCGAAATT 935383 Query 123708 ATCGAATA--CAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGT-G 123764 | ||||| |||| | ||| | || || ||||| || |||||||| || |||| | Sbjct 935382 GTGGAATATTCAGCAC--CTGATGAGGTAGCTGTGTGCAACTTGGCTTCAATC-GCGTTG 935326 Query 123765 AATCGTTGCGTC------GAAAACGGCGCTTTTAATTTCCAAACGC-TCAAACGCATAAC 123817 ||| | ||| ||||| || | | ||| || ||| ||||| | || Sbjct 935325 AATATGTTTGTCACACCCGAAAAAA-CG-TACGACTTT--AAGCGCCTCAAAGAGGTCAC 935270 Query 123818 AAAAACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGA 123877 ||||| || | |||||||| ||||| || || ||||| |||||| || ||| Sbjct 935269 CAAAACCGTTACACGTAATTTGAATAAAATAATAGACATTAATCATTATCCCTTACCGGA 935210 Query 123878 AGCGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGA 123937 || | || ||||| | ||| | || |||| | || | || || || || || Sbjct 935209 GGCAAGGAAATCGAATTTCAGACATCGTCCCATCGGTATTGGAGTACAGGGTTTTGCTGA 935150 Query 123938 CGCGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTT---AATAC 123994 ||| || | | |||| || |||||||| || |||||| || ||| ||| Sbjct 935149 CGCTTTAATTTTAATGCGTTATCCATACGAAAGTGAAGAAGCA---TTACTTTTGAATCA 935093 Query 123995 GCAAATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAAT 124054 ||||||| |||||||||||| || ||||| ||||| || || |||||| | || ||| Sbjct 935092 GCAAATATTCGAAACAATTTACTATGGCGCCTTGGAAGCTAGTTGCGAATTAGCCGAAAA 935033 Query 124055 TCACGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGA 124114 | ||| | || |||| ||||| || || | || |||||| | ||||| || Sbjct 935032 ACTTGGCCCCTATGAAACTTACGAAGGTTCACCCGTTAGTAAGGGTATTCTACAGTATGA 934973 Query 124115 CATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATC 124174 ||||||| || ||||| || || | ||| | |||| || || || | ||| Sbjct 934972 CATGTGGGATAAAACACCAACTGATCTTTGGAATTGGACCGAATTGAAGGAGAAAATAAA 934913 Query 124175 GACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCA 124234 | || ||| | || ||||| | || | ||| |||||| || || | || || || Sbjct 934912 GCAACATGGTGTCCGCAACTCTTTACTGCTTGCGCCCATGCCAACTGCTTCAACAGCACA 934853 Query 124235 AATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGT 124294 |||| | || ||||| || || || || || | |||| |||| | || || || || Sbjct 934852 AATTATGGGCAACAATGAGTCATTTGAACCATACACTTCCAATATTTATACACGTCGTGT 934793 Query 124295 GTTAGCCGGCGATTTTCAAGTGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAA 124354 | | | || || |||||||| |||||||||| ||| || ||| | | ||| Sbjct 934792 GCTTTCAGGTGAATTTCAAGTTGTAAATCATCACTTGTTGCGCGATCTAACCGAGTTGGG 934733 Query 124355 TTTGTACGATGAAAACATGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCAT 124414 ||||| ||||| | ||| || | ||||| | | ||| | | || || Sbjct 934732 TTTGTGGGATGATGATATGAAGAATAATATTATAACCAGTCGCGGCTCCATACAAAATAT 934673 Query 124415 CGCTTCGATTCCGGAACACGTCAAGC-AACTGTACAAAACCGTGTGGGAAATGAAAAATA 124473 | || || || | ||| | | || | || |||||||| || ||||| || | Sbjct 934672 TGAATCCATACCACAGCACAT-ACGCGATCTATACAAAACTGTTTGGGAGATTTCCGTGA 934614 Query 124474 AACGATTAATTGAAATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTA 124533 || || ||| ||||||| | || || || || | || ||||||||||| || || | Sbjct 934613 AAACATCAATCAAAATGGCTGCAGATCGCGGTGCATTCATCGATCAAAGTCAGTCGTTCA 934554 Query 124534 ACGTGTTTGTAGCGGAACCCACCTACGCCCGCATGACCAGCATACACATGCACGCGTGGA 124593 || | || || || |||| ||| | | || ||||| | || |||| Sbjct 934553 ACATACACGTGGCTGAGCCCAACTATGGTAAGCTTACTTCTATACATTTCTTCGGCTGGA 934494 Query 124594 --GCAGCGGACTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCAT 124651 ||| || ||||| |||||||||||||| || | || ||||| || || |||| || Sbjct 934493 AGGCA--GGTCTCAAGACGGGCATGTATTATTTGCGTACGAAACCAGCTGCAAATGCTAT 934436 Query 124652 TCAATTTACCGTCGACAAA 124670 |||||||| || || ||| Sbjct 934435 ACAATTTACTGTGGATAAA 934417 >seq1558 Length=2163639 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || || | ||| || ||||| ||||||||||| || || ||| Sbjct 2034177 ATACCACCACGAAGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCG 2034118 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| |||||||| ||||| ||| | ||||| || || || || || Sbjct 2034117 GACAAGGTGCGACCATCTTCCAATTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGG 2034058 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||| ||||||||||| ||||| ||||| ||| | |||||| |||| |||| Sbjct 2034057 GGGATGCCCTCTTTATCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCG 2033998 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | |||| || || || |||| ||||| || ||||| ||||| Sbjct 2033997 ACCTCTAAGGTAATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 2033948 >seq603 Length=780983 Score = 123 bits (136), Expect = 2e-23 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189 |||| ||| || || |||||||| || |||||||| ||| ||| || | | ||| | Sbjct 746006 ACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCG--GACAGTGTGCGTCCATCCT 745949 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 |||| ||||| || ||| | ||||| ||||| || || || || || ||||| ||||||| Sbjct 745948 CCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTT 745889 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 ||||||| ||||| || | ||| ||||||| ||| || || | ||| | |||| Sbjct 745888 GAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTT 745829 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || | |||||| || ||||| ||||| Sbjct 745828 TTCCCGTCAAAGTTTTGACGAAAATCTGCAT 745798 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 |||||||| || | | ||| | ||| || || |||||||| || ||||| || ||| Sbjct 747779 CCTCCGCGAAGACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGAC 747720 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || ||| || | ||| || || || | ||||| ||||| || || || ||| Sbjct 747719 AAAGTACGTCCATCCTCAAGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTGGA 747660 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 ||||||||||||||||| || || || | || | ||| || || | ||||||| Sbjct 747659 ATGCCTTCTTTATCTTGGATCTTAGCCTTAACATTCTCAATGGTATCTGAGGGCTCGACT 747600 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | || | |||||||| || || || || || || |||||||| Sbjct 747599 TCCAAGGTGATGGTTTTGCCAGTGAGGGTCTTAACGAAGATTTGCAT 747553 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 |||| || || ||||||||||| || || || || ||| | ||| ||| ||| Sbjct 747533 ACTAAGTGGAGGGTTGATTCCTTCTGAATGTTGTAGTCGGACAAGGTACGTCCATCCTCC 747474 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 ||||| || || || | ||||| ||||| || || || || || ||||| |||||||| Sbjct 747473 AATTGCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCCTTATCTTGG 747414 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| ||||| || | |||||| || | ||| ||||| | || | |||||| Sbjct 747413 ATTTTGGCTTTGACATTCTCAATGGTGTCAGATGGCTCAACTTCCAAGGTGATGGTTTTG 747354 Query 45312 CCGGTTAGAGTTTT 45325 || || || || || Sbjct 747353 CCAGTGAGGGTCTT 747340 >seq2605 Length=276952 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 |||| ||||| || || || || || |||||||| || | || | ||| ||| Sbjct 242105 ACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATCTTCC 242046 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 ||||| ||||| || | || | || || || || || ||||| ||||| ||||||||| Sbjct 242045 AATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGGGGAATTCCTTCCTTATCTTGA 241986 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| || | ||| | || || |||| ||| || || ||||| | || || Sbjct 241985 ATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGCTCAACCTCAAGAGTGATGGTCTTA 241926 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATCGC 45343 || || || |||||||| ||||||||||| || Sbjct 241925 CCCGTAAGGGTTTTTACGAAAATTTGCATTGC 241894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451984520967760