Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq3107 232 6e-56
seq1558 127 2e-24
seq603 123 2e-23
seq2605 95.1 1e-14
>seq3107
Length=1323484
Score = 232 bits (256), Expect = 6e-56
Identities = 938/1459 (64%), Gaps = 44/1459 (3%)
Strand=Plus/Minus
Query 123237 ATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGC---AAACGCAAA 123293
||| ||||||| | |||||| | | || | || || || || ||| ||||| |
Sbjct 935856 ATGTTGCGAGTGTTCAATAATGTAGCACGCTATGTGGATCAAGGTGGCGGTAAACGTCCA 935797
Query 123294 GGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTA 123353
||||| | || ||||| || ||||| ||||| | |||| | | | | ||||| ||||
Sbjct 935796 GGCGCATTTGCCATCTACCTGGAACCATGGCATGCTGATATTTTCCAATTTTTGGATTTG 935737
Query 123354 AAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTA 123413
|| |||| ||| ||||| | ||| | |||||||| || ||||| ||| ||
Sbjct 935736 AAGAAAAACACTGGGAAAGAAGAGCATCGCGCCAGAGATTTGTTTTATGCTTTGTGGATA 935677
Query 123414 CCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGAT 123473
|| ||| | |||||| ||| ||| ||| | | | | |||||||| |||||||| |
Sbjct 935676 CCTGATCTATTTATGAAACGTGTAGAAGCCAATGAAGACTGGTCGCTAATGTGTCCACAC 935617
Query 123474 CGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATAC 123533
||||||||| | || || | || | |||| || | || || | ||||
Sbjct 935616 AAGTGTCCCGGTCTACATGAAGTATGGGGTGAAGAGTTCGAAAAATTATATCTGAAATAT 935557
Query 123534 GAGCGCGAAGGCAAACAGGTTAGTCAG---GTTCCGGCAC---GTGATTTGTTCAAATTT 123587
|| | ||||| || | || | || || |||| || || ||| | ||
Sbjct 935556 GAACAGGAAGG---ACGTGCTAATAAGAAAGTAAAAGCACAAAGTCTTTGGTTTAGCATT 935500
Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647
||| ||| | ||||| || ||||| || || |||||| | || ||||| || || ||
Sbjct 935499 ATT---GAATCGCAAGTGGAGACCGGCACACCATACATGTTGTATAAAGATGCTTGTAAT 935443
Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATT 123707
| || | ||||| || | || ||||| || ||||||||| | || ||||||||
Sbjct 935442 CGAAAGAGTAATCAACAGAATGTTGGTACAATTAAGTGTAGTAATTTATGTACCGAAATT 935383
Query 123708 ATCGAATA--CAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGT-G 123764
| ||||| |||| | ||| | || || ||||| || |||||||| || |||| |
Sbjct 935382 GTGGAATATTCAGCAC--CTGATGAGGTAGCTGTGTGCAACTTGGCTTCAATC-GCGTTG 935326
Query 123765 AATCGTTGCGTC------GAAAACGGCGCTTTTAATTTCCAAACGC-TCAAACGCATAAC 123817
||| | ||| ||||| || | | ||| || ||| ||||| | ||
Sbjct 935325 AATATGTTTGTCACACCCGAAAAAA-CG-TACGACTTT--AAGCGCCTCAAAGAGGTCAC 935270
Query 123818 AAAAACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGA 123877
||||| || | |||||||| ||||| || || ||||| |||||| || |||
Sbjct 935269 CAAAACCGTTACACGTAATTTGAATAAAATAATAGACATTAATCATTATCCCTTACCGGA 935210
Query 123878 AGCGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGA 123937
|| | || ||||| | ||| | || |||| | || | || || || || ||
Sbjct 935209 GGCAAGGAAATCGAATTTCAGACATCGTCCCATCGGTATTGGAGTACAGGGTTTTGCTGA 935150
Query 123938 CGCGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTT---AATAC 123994
||| || | | |||| || |||||||| || |||||| || ||| |||
Sbjct 935149 CGCTTTAATTTTAATGCGTTATCCATACGAAAGTGAAGAAGCA---TTACTTTTGAATCA 935093
Query 123995 GCAAATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAAT 124054
||||||| |||||||||||| || ||||| ||||| || || |||||| | || |||
Sbjct 935092 GCAAATATTCGAAACAATTTACTATGGCGCCTTGGAAGCTAGTTGCGAATTAGCCGAAAA 935033
Query 124055 TCACGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGA 124114
| ||| | || |||| ||||| || || | || |||||| | ||||| ||
Sbjct 935032 ACTTGGCCCCTATGAAACTTACGAAGGTTCACCCGTTAGTAAGGGTATTCTACAGTATGA 934973
Query 124115 CATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATC 124174
||||||| || ||||| || || | ||| | |||| || || || | |||
Sbjct 934972 CATGTGGGATAAAACACCAACTGATCTTTGGAATTGGACCGAATTGAAGGAGAAAATAAA 934913
Query 124175 GACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCA 124234
| || ||| | || ||||| | || | ||| |||||| || || | || || ||
Sbjct 934912 GCAACATGGTGTCCGCAACTCTTTACTGCTTGCGCCCATGCCAACTGCTTCAACAGCACA 934853
Query 124235 AATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGT 124294
|||| | || ||||| || || || || || | |||| |||| | || || || ||
Sbjct 934852 AATTATGGGCAACAATGAGTCATTTGAACCATACACTTCCAATATTTATACACGTCGTGT 934793
Query 124295 GTTAGCCGGCGATTTTCAAGTGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAA 124354
| | | || || |||||||| |||||||||| ||| || ||| | | |||
Sbjct 934792 GCTTTCAGGTGAATTTCAAGTTGTAAATCATCACTTGTTGCGCGATCTAACCGAGTTGGG 934733
Query 124355 TTTGTACGATGAAAACATGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCAT 124414
||||| ||||| | ||| || | ||||| | | ||| | | || ||
Sbjct 934732 TTTGTGGGATGATGATATGAAGAATAATATTATAACCAGTCGCGGCTCCATACAAAATAT 934673
Query 124415 CGCTTCGATTCCGGAACACGTCAAGC-AACTGTACAAAACCGTGTGGGAAATGAAAAATA 124473
| || || || | ||| | | || | || |||||||| || ||||| || |
Sbjct 934672 TGAATCCATACCACAGCACAT-ACGCGATCTATACAAAACTGTTTGGGAGATTTCCGTGA 934614
Query 124474 AACGATTAATTGAAATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTA 124533
|| || ||| ||||||| | || || || || | || ||||||||||| || || |
Sbjct 934613 AAACATCAATCAAAATGGCTGCAGATCGCGGTGCATTCATCGATCAAAGTCAGTCGTTCA 934554
Query 124534 ACGTGTTTGTAGCGGAACCCACCTACGCCCGCATGACCAGCATACACATGCACGCGTGGA 124593
|| | || || || |||| ||| | | || ||||| | || ||||
Sbjct 934553 ACATACACGTGGCTGAGCCCAACTATGGTAAGCTTACTTCTATACATTTCTTCGGCTGGA 934494
Query 124594 --GCAGCGGACTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCAT 124651
||| || ||||| |||||||||||||| || | || ||||| || || |||| ||
Sbjct 934493 AGGCA--GGTCTCAAGACGGGCATGTATTATTTGCGTACGAAACCAGCTGCAAATGCTAT 934436
Query 124652 TCAATTTACCGTCGACAAA 124670
|||||||| || || |||
Sbjct 934435 ACAATTTACTGTGGATAAA 934417
>seq1558
Length=2163639
Score = 127 bits (140), Expect = 2e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || || || | || || | ||| || ||||| ||||||||||| || || |||
Sbjct 2034177 ATACCACCACGAAGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCG 2034118
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| | ||| |||||||| ||||| ||| | ||||| || || || || ||
Sbjct 2034117 GACAAGGTGCGACCATCTTCCAATTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGG 2034058
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| ||||| ||||||||||| ||||| ||||| ||| | |||||| |||| ||||
Sbjct 2034057 GGGATGCCCTCTTTATCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCG 2033998
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || | |||| || || || |||| ||||| || ||||| |||||
Sbjct 2033997 ACCTCTAAGGTAATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 2033948
>seq603
Length=780983
Score = 123 bits (136), Expect = 2e-23
Identities = 155/211 (73%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189
|||| ||| || || |||||||| || |||||||| ||| ||| || | | ||| |
Sbjct 746006 ACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCG--GACAGTGTGCGTCCATCCT 745949
Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249
|||| ||||| || ||| | ||||| ||||| || || || || || ||||| |||||||
Sbjct 745948 CCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTT 745889
Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309
||||||| ||||| || | ||| ||||||| ||| || || | ||| | ||||
Sbjct 745888 GAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTT 745829
Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
| || || | |||||| || ||||| |||||
Sbjct 745828 TTCCCGTCAAAGTTTTGACGAAAATCTGCAT 745798
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|||||||| || | | ||| | ||| || || |||||||| || ||||| || |||
Sbjct 747779 CCTCCGCGAAGACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGAC 747720
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| || ||| || | ||| || || || | ||||| ||||| || || || |||
Sbjct 747719 AAAGTACGTCCATCCTCAAGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTGGA 747660
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293
||||||||||||||||| || || || | || | ||| || || | |||||||
Sbjct 747659 ATGCCTTCTTTATCTTGGATCTTAGCCTTAACATTCTCAATGGTATCTGAGGGCTCGACT 747600
Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| | || | |||||||| || || || || || || ||||||||
Sbjct 747599 TCCAAGGTGATGGTTTTGCCAGTGAGGGTCTTAACGAAGATTTGCAT 747553
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|||| || || ||||||||||| || || || || ||| | ||| ||| |||
Sbjct 747533 ACTAAGTGGAGGGTTGATTCCTTCTGAATGTTGTAGTCGGACAAGGTACGTCCATCCTCC 747474
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
||||| || || || | ||||| ||||| || || || || || ||||| ||||||||
Sbjct 747473 AATTGCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCCTTATCTTGG 747414
Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311
||||| ||||| || | |||||| || | ||| ||||| | || | ||||||
Sbjct 747413 ATTTTGGCTTTGACATTCTCAATGGTGTCAGATGGCTCAACTTCCAAGGTGATGGTTTTG 747354
Query 45312 CCGGTTAGAGTTTT 45325
|| || || || ||
Sbjct 747353 CCAGTGAGGGTCTT 747340
>seq2605
Length=276952
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|||| ||||| || || || || || |||||||| || | || | ||| |||
Sbjct 242105 ACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATCTTCC 242046
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
||||| ||||| || | || | || || || || || ||||| ||||| |||||||||
Sbjct 242045 AATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGGGGAATTCCTTCCTTATCTTGA 241986
Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311
||||| || | ||| | || || |||| ||| || || ||||| | || ||
Sbjct 241985 ATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGCTCAACCTCAAGAGTGATGGTCTTA 241926
Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATCGC 45343
|| || || |||||||| ||||||||||| ||
Sbjct 241925 CCCGTAAGGGTTTTTACGAAAATTTGCATTGC 241894
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451984520967760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |