Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1113 104 3e-17 >seq1113 Length=4665328 Score = 104 bits (114), Expect = 3e-17 Identities = 244/363 (67%), Gaps = 8/363 (2%) Strand=Plus/Minus Query 175746 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 175805 |||||||||||||||| || | || ||||| | ||||||||| | |||| ||||| Sbjct 2123181 AACCTGTGCCAATACCATCAGCACCATTCACCAAAACCATTGGTATAATTGGTATATACC 2123122 Query 175806 AGTCTGGTTCAATCGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCG 175865 | | |||||||||| | |||||||| | || | | || || ||||| | Sbjct 2123121 ATTGTGGTTCAATCTTTTGACCATCATCAACTTCGTACGTCAACAATGGATCATCGGCTG 2123062 Query 175866 GATCAAAGATTTTACGAGCATCCTTGGTGAGTTTT--GTGAAGATGTACCT--CGTTTGA 175921 | | || || || | || ||||| || ||||| || || | || | | Sbjct 2123061 GGTGGAATATGAGTCGCG--TCAAGGGTGACATTAAGGTGAAAATATAACGAGCGCTCGC 2123004 Query 175922 GACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTG 175981 || |||||| |||||| ||||| || || |||||||||| ||||| | | ||| Sbjct 2123003 -ACA-ATCTTTACCACCCTGCAGACGTGTACCGAATTGACCACGAGGCTCCAATAAATTA 2122946 Query 175982 ATATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACT 176041 ||||| ||||| || | || | | |||||| ||||| || ||| || | || | Sbjct 2122945 ATATTATTTGATCCTACGTAATTTTGCGCCAAATTGACTATGGTAGCCTGCAATGACATC 2122886 Query 176042 TCACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATC 176101 ||||||||||||||||| ||| | || ||||| | | | ||| || || || |||| | Sbjct 2122885 TCACCGTGATGGTAGGCGGACATTTCAGCCACTGAACCAGACAATTGGGCAACTTTCACC 2122826 Query 176102 TCA 176104 ||| Sbjct 2122825 TCA 2122823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613481846814960