Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1558 123 6e-23 seq2605 107 5e-18 >seq1558 Length=2163639 Score = 123 bits (136), Expect = 6e-23 Identities = 166/228 (73%), Gaps = 5/228 (2%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||| || | ||||| || ||||||||||||| ||||||||| | ||| || Sbjct 2034168 CGAAGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTG 2034109 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| ||||||||||||||||| | |||||| || || || || || Sbjct 2034108 CGACCATCTTCCAATTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGGATGCCC 2034049 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || || || ||| || || || ||||| |||||| | | || || || || Sbjct 2034048 TCTTTATCTTGGAT-TTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAA 2033990 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || |||||||| || | ||||| || ||||| || |||||| Sbjct 2033989 GGTAATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTG---CATTTT 2033945 >seq2605 Length=276952 Score = 107 bits (118), Expect = 5e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || ||||| || || | || ||||||||||| || | |||||||||| ||||||||| Sbjct 242093 GTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATCTTCCAATTGCTTTCCG 242034 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || || || |||||||| || || || ||||||||| || ||||| || ||| Sbjct 242033 GCAAAAATTAGACGCTGTTGATCAGGGGGAATTCCTTCCTTATCTTGAATTTTGGCCTTA 241974 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || ||| | || || | | || || || | ||||| ||||||||||| || ||| Sbjct 241973 ACATGTTCAATAGTATCCGAAGGCTCAACCTCAAGAGTGATGGTCTTACCCGTAAGGGTT 241914 Query 199613 TTCACAAAAATTTG 199626 || || |||||||| Sbjct 241913 TTTACGAAAATTTG 241900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178871663091502