Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 4e-15 >seq2 Length=5358759 Score = 96.9 bits (106), Expect = 4e-15 Identities = 272/413 (66%), Gaps = 6/413 (1%) Strand=Plus/Plus Query 9186 ATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTC 9245 |||| |||||| || | |||||||| | ||||| | || | |||||||| || || Sbjct 1534971 ATCTGACGATCGAATCTTCCTGGACGCATCAGCGCTTTGTCTAATATATCAACACGGTTA 1535030 Query 9246 GTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGT 9305 || || || | ||||||| | || | ||| |||||| ||||| || ||| | | Sbjct 1535031 GTTGCAGCTAACACAACAACATTAGTAGTAGTATTAAAACCGTCCATTTCAACCAACAAT 1535090 Query 9306 TGGTTAATAGTTTGTTCCC--GTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCT 9363 || || || | ||||| | |||| || | | | | ||| |||| Sbjct 1535091 TGATT--TAATGTGTTCTCTTGTTCGGAATGTCCACCAAAAGATTTACCACCACGTTTGC 1535148 Query 9364 TTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTT 9423 ||| || |||||||| |||||||| || | |||||||||| || | || || ||| Sbjct 1535149 GTCCAACCGCATCAATTTCATCAATAAACAAAATACATGGTGCATGCTTTCGAGCCATTG 1535208 Query 9424 CAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGG 9483 ||| | ||| ||||||| | | || ||||||||||||||||||| ||| | | Sbjct 1535209 AAAACATATCTCGAACCCGTGACGGACCTACACCAACAAACATCTCCAAAAACTCGGAAC 1535268 Query 9484 CGGA-ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 9542 |||| ||| | || || || ||||| | |||||| || | || || | | || Sbjct 1535269 CGGATACACT-TATAAAAGGAACATTTGCTTCACCAGCGGTTGCCTTTGCTAATAATGTT 1535327 Query 9543 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 || || ||||| || ||| | ||| | ||||| |||||| || ||||| Sbjct 1535328 TTTCCTGTACCAGGTGGACCTGTGAGCATAGCACCTTTTGGAATTTTAGCGCC 1535380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589956419043440