Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq603 136 9e-27 seq2605 123 6e-23 >seq603 Length=780983 Score = 136 bits (150), Expect = 9e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || ||||| || || || |||||||||| ||||| | || ||||| || || Sbjct 745772 TGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAGAGTGCGTCCGTCTTCCAGTTGT 745713 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || ||||| | |||||||| ||||| || || ||||||||||||||||| || Sbjct 745712 TTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTCTTGAATCTTA 745653 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || || ||||| || || || ||| || || || || | ||||| || ||| Sbjct 745652 GCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCTTGCCAGTC 745593 Query 195118 AAAGTTTTTACGAACACTTGCATTT 195142 || || || ||||| | |||||||| Sbjct 745592 AAGGTCTTCACGAAGATTTGCATTT 745568 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || |||||||| || || |||||||| || |||| || || | ||||| || | ||| Sbjct 746000 TGTAGAGTGGATTCCTTCTGAATATTATAGTCGGACAGTGTGCGTCCATCCTCCAACTGT 745941 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || ||||| || | |||||||| ||||| || || ||||| || ||||||||||| Sbjct 745940 TTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGAATTTTA 745881 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||| ||||||||||| || ||| || || || | || | || ||||| ||| Sbjct 745880 GCTTTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTTCCCGTC 745821 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 |||||||| ||||| | ||||| Sbjct 745820 AAAGTTTTGACGAAAATCTGCAT 745798 Score = 114 bits (126), Expect = 3e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || || || || || |||||||| |||| | ||| | ||||| || || ||| Sbjct 747755 TGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGACAAAGTACGTCCATCCTCAAGTTGC 747696 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || || || | |||||||| ||||| |||||||||||||| ||||| || || Sbjct 747695 TTGCCGGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCTTTATCTTGGATCTTA 747636 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || ||||||||||| || || || ||||| | ||| | || || || || Sbjct 747635 GCCTTAACATTCTCAATGGTATCTGAGGGCTCGACTTCCAAGGTGATGGTTTTGCCAGTG 747576 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | |||||| Sbjct 747575 AGGGTCTTAACGAAGATTTGCAT 747553 Score = 95.1 bits (104), Expect = 3e-14 Identities = 122/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCT 194995 ||| || || || || || ||||| ||||| |||| |||| || | ||||| || | | Sbjct 747528 GTGGAGGGTTGATTCCTTCTGAATGTTGTAGTCGGACAAG-GTACGTCCATCCTCCAATT 747470 Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 |||| || || || || | |||||||| ||||| || || ||||| || ||||| |||| Sbjct 747469 GCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCCTTATCTTGGATTT 747410 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 | ||||| |||||||||||||| || || ||||| | ||| Sbjct 747409 TGGCTTTGACATTCTCAATGGTGTCAGATGGCTCAACTTCCAAGGT 747364 >seq2605 Length=276952 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || |||||||| |||||||| || || || | || | |||||||| | ||||| || Sbjct 242093 GTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATCTTCCAATTGCTTTCCG 242034 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || || || || || ||||| || || ||||| ||||| || ||||||||||| ||| Sbjct 242033 GCAAAAATTAGACGCTGTTGATCAGGGGGAATTCCTTCCTTATCTTGAATTTTGGCCTTA 241974 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || | ||||| || |||||| || || ||||| || | ||||| || || | ||| Sbjct 241973 ACATGTTCAATAGTATCCGAAGGCTCAACCTCAAGAGTGATGGTCTTACCCGTAAGGGTT 241914 Query 195124 TTTACGAACACTTGCATT 195141 |||||||| | ||||||| Sbjct 241913 TTTACGAAAATTTGCATT 241896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109434604439702