Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq603 136 9e-27
seq2605 123 6e-23
>seq603
Length=780983
Score = 136 bits (150), Expect = 9e-27
Identities = 153/205 (75%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
||||| || ||||| || || || |||||||||| ||||| | || ||||| || ||
Sbjct 745772 TGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAGAGTGCGTCCGTCTTCCAGTTGT 745713
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
||||| || ||||| | |||||||| ||||| || || ||||||||||||||||| ||
Sbjct 745712 TTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTCTTGAATCTTA 745653
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
|| || || ||||| || || || ||| || || || || | ||||| || |||
Sbjct 745652 GCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCTTGCCAGTC 745593
Query 195118 AAAGTTTTTACGAACACTTGCATTT 195142
|| || || ||||| | ||||||||
Sbjct 745592 AAGGTCTTCACGAAGATTTGCATTT 745568
Score = 132 bits (146), Expect = 1e-25
Identities = 151/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| |||||||| || || |||||||| || |||| || || | ||||| || | |||
Sbjct 746000 TGTAGAGTGGATTCCTTCTGAATATTATAGTCGGACAGTGTGCGTCCATCCTCCAACTGT 745941
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| || ||||| || | |||||||| ||||| || || ||||| || |||||||||||
Sbjct 745940 TTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGAATTTTA 745881
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
||||| ||||||||||| || ||| || || || | || | || ||||| |||
Sbjct 745880 GCTTTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTTCCCGTC 745821
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
|||||||| ||||| | |||||
Sbjct 745820 AAAGTTTTGACGAAAATCTGCAT 745798
Score = 114 bits (126), Expect = 3e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| || || || || || || |||||||| |||| | ||| | ||||| || || |||
Sbjct 747755 TGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGACAAAGTACGTCCATCCTCAAGTTGC 747696
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| || || || || | |||||||| ||||| |||||||||||||| ||||| || ||
Sbjct 747695 TTGCCGGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCTTTATCTTGGATCTTA 747636
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
||| || ||||||||||| || || || ||||| | ||| | || || || ||
Sbjct 747635 GCCTTAACATTCTCAATGGTATCTGAGGGCTCGACTTCCAAGGTGATGGTTTTGCCAGTG 747576
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
| || || ||||| | ||||||
Sbjct 747575 AGGGTCTTAACGAAGATTTGCAT 747553
Score = 95.1 bits (104), Expect = 3e-14
Identities = 122/166 (73%), Gaps = 2/166 (1%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCT 194995
||| || || || || || ||||| ||||| |||| |||| || | ||||| || | |
Sbjct 747528 GTGGAGGGTTGATTCCTTCTGAATGTTGTAGTCGGACAAG-GTACGTCCATCCTCCAATT 747470
Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055
|||| || || || || | |||||||| ||||| || || ||||| || ||||| ||||
Sbjct 747469 GCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCCTTATCTTGGATTT 747410
Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101
| ||||| |||||||||||||| || || ||||| | |||
Sbjct 747409 TGGCTTTGACATTCTCAATGGTGTCAGATGGCTCAACTTCCAAGGT 747364
>seq2605
Length=276952
Score = 123 bits (136), Expect = 6e-23
Identities = 146/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003
|| |||||||| |||||||| || || || | || | |||||||| | ||||| ||
Sbjct 242093 GTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATCTTCCAATTGCTTTCCG 242034
Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063
|| || || || || ||||| || || ||||| ||||| || ||||||||||| |||
Sbjct 242033 GCAAAAATTAGACGCTGTTGATCAGGGGGAATTCCTTCCTTATCTTGAATTTTGGCCTTA 241974
Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123
|| | ||||| || |||||| || || ||||| || | ||||| || || | |||
Sbjct 241973 ACATGTTCAATAGTATCCGAAGGCTCAACCTCAAGAGTGATGGTCTTACCCGTAAGGGTT 241914
Query 195124 TTTACGAACACTTGCATT 195141
|||||||| | |||||||
Sbjct 241913 TTTACGAAAATTTGCATT 241896
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109434604439702
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |