Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3107 309 3e-79 seq2718 273 2e-68 >seq3107 Length=1323484 Score = 309 bits (342), Expect = 3e-79 Identities = 1198/1884 (64%), Gaps = 32/1884 (2%) Strand=Plus/Plus Query 46973 TTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032 ||| ||||||||||| | || | ||| |||| ||| || || ||||||||||| || Sbjct 934417 TTTATCCACAGTAAATTGTATAGCATTTGCAGCTGGTTTCGTACGCAAATAATACATGCC 934476 Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092 ||||| | |||| |||| || ||||||| ||| ||| | ||| ||| | || Sbjct 934477 CGTCTTGAGACCTGCCTTCCAGCCGAAGAAATGTATAGAAGTAAGCTTACCATAGTTGGG 934536 Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152 || | | || || || | || ||||| ||||| || |||||||| | ||| || || Sbjct 934537 CTCAGCCACGTGTATGTTGAACGACTGACTTTGATCGATGAATGCACCGCGATCTGCAGC 934596 Query 47153 CATATCTAAAATAACCCTTTGTGGTA-TCTCCCATACTGTTTTATAAATTTGTTTAATGT 47211 ||| | | | | || || | ||||||| || ||||| || | | |||| Sbjct 934597 CATTT-TGATTGATGTTTTCACGGAAATCTCCCAAACAGTTTTGTATAGATCGCGTATGT 934655 Query 47212 CTTCTGGGA--GATT-AGTATTTTGAATAGATCCTCCgttttctataattttgtttttta 47268 | ||| | |||| | ||||||| || || || | | |||||| || || || | Sbjct 934656 GCTGTGGTATGGATTCAATATTTTGTATGGAGCCGCGACTGGTTATAATATTATTCTTCA 934715 Query 47269 attcatttgaccaaagttttcgttcagtta-atgtttttaaAAGATGAGGATTAACAATT 47327 |||| ||| | || |||| || | ||| ||| |||| |||| | Sbjct 934716 TATCATCATCCCACAAACCCAACTCGGTTAGATCGCGCAACAAG-TGATGATTTACAACT 934774 Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 |||||||| || || || || | ||| |||| ||||| || |||||||| | || Sbjct 934775 TGAAATTCACCTGAAAGCACACGACGTGTATAAATATTGGAAGTGTATGGTTCAAATGAC 934834 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||| || || | |||||| || ||||| || || ||||||| |||| | ||| Sbjct 934835 TCATTGTTGCCCATAATTTGTGCTGTTGAAGCAGTTGGCATGGGCGCAAGCAGTAAAGAG 934894 Query 47448 TTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGAT 47507 || | || |||| || | ||| | |||||| ||||||||| | | Sbjct 934895 TTGCGGACACCATGTTGCTTTATTTTCTCCTTCAATTCGGTCCAATTCCAAAGATCAGTT 934954 Query 47508 GGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATAT 47567 || || ||| | ||||| || ||||| || ||||| | || ||||| | || Sbjct 934955 GGTGTTTTATCCCACATGTCATACTGTAGAATACCCTTACTAACGGGTGAACCTTCGTAA 935014 Query 47568 GTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATAT 47627 |||| ||| || || | || || | ||| ||||| |||||||| || | ||| || Sbjct 935015 GTTTCATAGGGGCCAAGTTTTTCGGCTAATTCGCAACTAGCTTCCAAGGCGCCATAGTAA 935074 Query 47628 ATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATANNNN 47687 |||||||| ||||||| || | | ||||||| ||| | ||||| Sbjct 935075 ATTGTTTCGAATATTTGCTGATTCAAAAGTAATGCTTCTTCACTTTCGTATGGATAACGC 935134 Query 47688 NNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTA 47747 || | || || || || || || |||||||| || || | ||| | | Sbjct 935135 ATTAAAATTAAAGCGTCAGCAAAACCCTGTACTCCAATACCGATGGGACGATGTCTGAAA 935194 Query 47748 TTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNN 47807 || || | || || ||||| ||||| | || || ||||| |||||||| | | Sbjct 935195 TTCGATTTCCTTGCCTCCGGTAAGGGATAATGATTAATGTCTATTATTTTATTCAAATTA 935254 Query 47808 NNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATT---TATA 47864 | ||| | | ||||| || || | || | | | Sbjct 935255 CGTGTAACGGTTTTGGTGACCTCTTTGAGGCGCTTAAAGTCGTACGTTTTTTCGGGTGTG 935314 Query 47865 ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTA 47924 |||||| |||| | || || || || | || || ||||||||||||| || | | Sbjct 935315 ACAAACATATTCAACGCGATTGAAGCCAAGTTGCACACAGCTACCTCATCAGGTGCTGAA 935374 Query 47925 TATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTA 47984 |||| | ||||| | ||||| ||||| ||| || || ||||| | ||| || |||||| Sbjct 935375 TATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTACCAACATTCTGTTGATTA 935434 Query 47985 ttnnnnttGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGAT 48044 | ||||| || || || || | ||| | ||||| || || || | || ||| Sbjct 935435 CTCTTTCGATTACAAGCATCTTTATACAACATGTATGGTGTGCCGGTCTCCACTTGCGAT 935494 Query 48045 TCAATGATAGATTTCCAAACAGTCCTAGCCTTTA------TAACAGCTCTAGCTTTATTA 48098 ||||| || ||||| | | || |||| || ||| | ||| Sbjct 935495 TCAATAATGCTAAACCAAAGACTTTGTGCTTTTACTTTCTTATTAGCACGTCCTT----- 935549 Query 48099 TCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCA 48158 | ||||| ||||| |||||| || || || || || || | || | || || || Sbjct 935550 -CCTGTTCATATTTCAGATATAATTTTTCGAACTCTTCACCCCATACTTCATGTAGACCG 935608 Query 48159 GGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAAT 48218 ||||| | | |||||||| | ||||| || |||| || ||| | |||||||| Sbjct 935609 GGACACTTGTGTGGACACATTAGCGACCAGTCTTCATTGGCTTCTACACGTTTCATAAAT 935668 Query 48219 ATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTA 48278 | ||| |||||||| | ||| ||| ||||| || | | | ||||| || ||| | Sbjct 935669 AGATCAGGTATCCACAAAGCATAAAACAAATCTCTGGCGCGATGCTCTTCTTTCCCAGTG 935728 Query 48279 TTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCC 48338 || | || | || | ||| | | |||||||||||||||||||| | || || || Sbjct 935729 TTTTTCTTCAAATCCAAAAATTGGAAAATATCAGCATGCCATGGTTCCAGGTAGATGGCA 935788 Query 48339 ATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACT 48398 | | | ||||| |||||| || |||||||| | ||| | || ||| || | ||| Sbjct 935789 AATGCGCCTGGACGTTTACCGCCACCTTGATCCACATAGCGTGCTACATTATTGAACACT 935848 Query 48399 CTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTA 48458 | ||||| || || | ||| |||||| | ||||| || |||| ||| | | || | Sbjct 935849 CGCAACATAGGCACCAAACCGTTTGATGTGCCATTTGTACCCGCAATTGCAGTGCCTTTT 935908 Query 48459 GCTCTTAT---AT-TACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGC 48514 || | ||| || ||| || | ||| ||||| || || ||| || || | || Sbjct 935909 GCACGTATGCAATGTAC--GTT--CAGACCAATACCCCCAGCAGATTTGGAAATCAATGC 935964 Query 48515 ACACCG-TTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAA 48573 ||| | | | | | | | |||| || || || ||| || | ||| | | ||||| Sbjct 935965 ACATTGATGTGCCGATGTGA-AAATCCCATCAATGGAATCGTCCACCATGGTCAGTAGAA 936023 Query 48574 AACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAA 48633 | || |||| |||||| || || | | | |||| |||||||| ||||| Sbjct 936024 AGCATGATGACAATTGCGGCTGCTTGGTGGCAGCAGCGAATAGCGTTGGAGAAGCATGCG 936083 Query 48634 TAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGAT 48693 |||| | || || | ||| || |||||||| || | | |||||| || || Sbjct 936084 TAAAATAACGTTCGGAAAGCAAGTTGTATGTTTCGATTGCTGCATCTATGTCTTCGCCAT 936143 Query 48694 GTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTA 48753 ||||||| || | |||||||||||||||| || |||| |||||||||||| ||||| Sbjct 936144 GTATACCGATGGCAACACGCATTAACATATGCTGTGGTCGCTCAACAATTTTGCCATTTA 936203 Query 48754 TTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGT 48813 ||| | | ||| || ||| | ||||||||||||||||| || || ||| ||| Sbjct 936204 ATTTTAGCAAATAGGAACGTTCAAGAGTTTTAAAACCAAAATAATTATAACCAAAATCGC 936263 Query 48814 TATCATTAATAATTGATGAATTTA 48837 |||| |||||| | || |||| Sbjct 936264 GGTCATAAATAATGGCAGAGTTTA 936287 >seq2718 Length=1670031 Score = 273 bits (302), Expect = 2e-68 Identities = 486/704 (69%), Gaps = 10/704 (1%) Strand=Plus/Minus Query 18795 ATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAAC 18854 ||| || ||||||| ||||| | ||| | | |||||||| || |||| || || Sbjct 71488 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAGATTCAC 71429 Query 18855 AGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATAC 18914 || | || || || | ||||| || || || || || || || || || || | | Sbjct 71428 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTAT---TTC 71372 Query 18915 AACTCTATCTTCATTAGGAGGGTATAGAAG---ATGTTTAAACATCAAACATGCAAAATC 18971 ||| || |||||| || | | | | ||||| |||||||||||||| || || Sbjct 71371 AACAATACGCTCATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACATGCGAAGTC 71312 Query 18972 ACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAG 19031 |||||| |||||||| |||| || | |||||| |||||||| || || ||||| | Sbjct 71311 ACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCATTAA 71252 Query 19032 TCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTAC 19091 || | ||| || | |||||| || |||||||| ||| ||||| |||||||| || Sbjct 71251 ACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAAATACCTTCAAC 71192 Query 19092 TGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAG 19151 || ||||| |||| || | ||| ||| | | || || | |||||| || Sbjct 71191 GGCAGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTTCGAAGAAATCCAAGCAAG 71132 Query 19152 TGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACAT 19211 |||||||| ||||| ||||| |||||||||||||||| ||| |||| | | Sbjct 71131 CGCCCAATCTGCCTTACGCTTTACGGCAGGCATTGTCTCTATAGCATTGAATAAGCAATT 71072 Query 19212 ACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAAT 19271 | | | | || |||| ||||| ||| || |||| || |||||||| ||||| | Sbjct 71071 CCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCAGAATGCAC 71012 Query 19272 ATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACT 19331 ||| || || || || |||||||| || || || | ||| ||||| | || ||||| Sbjct 71011 ATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACTTCCTG 70952 Query 19332 ACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAA 19391 || || | ||| || | ||||||||| || || |||||| || || ||||| ||||| Sbjct 70951 GCAGAAGCGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAGGCTAA 70892 Query 19392 TACATGTTTAATAAAATGTTTTTCA-TCTGAGGTTAATGTAT-TCCAATCATTAATATCT 19449 || || |||||||||| |||| | | || | | | | |||||||| |||||| Sbjct 70891 CACGTGGGAAATAAAATGTCGTTCATTATCAG--TGAGGCGTGCCCAATCATCCATATCT 70834 Query 19450 TTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493 ||||| | ||||||||| || |||||||| || || || ||||| Sbjct 70833 TTAGAAAGATCTACTTCCTCTACTGTCCAGAACGATGCTTCTGC 70790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562085570853840