Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq3107 309 3e-79
seq2718 273 2e-68
>seq3107
Length=1323484
Score = 309 bits (342), Expect = 3e-79
Identities = 1198/1884 (64%), Gaps = 32/1884 (2%)
Strand=Plus/Plus
Query 46973 TTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032
||| ||||||||||| | || | ||| |||| ||| || || ||||||||||| ||
Sbjct 934417 TTTATCCACAGTAAATTGTATAGCATTTGCAGCTGGTTTCGTACGCAAATAATACATGCC 934476
Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092
||||| | |||| |||| || ||||||| ||| ||| | ||| ||| | ||
Sbjct 934477 CGTCTTGAGACCTGCCTTCCAGCCGAAGAAATGTATAGAAGTAAGCTTACCATAGTTGGG 934536
Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152
|| | | || || || | || ||||| ||||| || |||||||| | ||| || ||
Sbjct 934537 CTCAGCCACGTGTATGTTGAACGACTGACTTTGATCGATGAATGCACCGCGATCTGCAGC 934596
Query 47153 CATATCTAAAATAACCCTTTGTGGTA-TCTCCCATACTGTTTTATAAATTTGTTTAATGT 47211
||| | | | | || || | ||||||| || ||||| || | | ||||
Sbjct 934597 CATTT-TGATTGATGTTTTCACGGAAATCTCCCAAACAGTTTTGTATAGATCGCGTATGT 934655
Query 47212 CTTCTGGGA--GATT-AGTATTTTGAATAGATCCTCCgttttctataattttgtttttta 47268
| ||| | |||| | ||||||| || || || | | |||||| || || || |
Sbjct 934656 GCTGTGGTATGGATTCAATATTTTGTATGGAGCCGCGACTGGTTATAATATTATTCTTCA 934715
Query 47269 attcatttgaccaaagttttcgttcagtta-atgtttttaaAAGATGAGGATTAACAATT 47327
|||| ||| | || |||| || | ||| ||| |||| |||| |
Sbjct 934716 TATCATCATCCCACAAACCCAACTCGGTTAGATCGCGCAACAAG-TGATGATTTACAACT 934774
Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387
|||||||| || || || || | ||| |||| ||||| || |||||||| | ||
Sbjct 934775 TGAAATTCACCTGAAAGCACACGACGTGTATAAATATTGGAAGTGTATGGTTCAAATGAC 934834
Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447
||||| || || | |||||| || ||||| || || ||||||| |||| | |||
Sbjct 934835 TCATTGTTGCCCATAATTTGTGCTGTTGAAGCAGTTGGCATGGGCGCAAGCAGTAAAGAG 934894
Query 47448 TTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGAT 47507
|| | || |||| || | ||| | |||||| ||||||||| | |
Sbjct 934895 TTGCGGACACCATGTTGCTTTATTTTCTCCTTCAATTCGGTCCAATTCCAAAGATCAGTT 934954
Query 47508 GGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATAT 47567
|| || ||| | ||||| || ||||| || ||||| | || ||||| | ||
Sbjct 934955 GGTGTTTTATCCCACATGTCATACTGTAGAATACCCTTACTAACGGGTGAACCTTCGTAA 935014
Query 47568 GTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATAT 47627
|||| ||| || || | || || | ||| ||||| |||||||| || | ||| ||
Sbjct 935015 GTTTCATAGGGGCCAAGTTTTTCGGCTAATTCGCAACTAGCTTCCAAGGCGCCATAGTAA 935074
Query 47628 ATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATANNNN 47687
|||||||| ||||||| || | | ||||||| ||| | |||||
Sbjct 935075 ATTGTTTCGAATATTTGCTGATTCAAAAGTAATGCTTCTTCACTTTCGTATGGATAACGC 935134
Query 47688 NNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTA 47747
|| | || || || || || || |||||||| || || | ||| | |
Sbjct 935135 ATTAAAATTAAAGCGTCAGCAAAACCCTGTACTCCAATACCGATGGGACGATGTCTGAAA 935194
Query 47748 TTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNN 47807
|| || | || || ||||| ||||| | || || ||||| |||||||| | |
Sbjct 935195 TTCGATTTCCTTGCCTCCGGTAAGGGATAATGATTAATGTCTATTATTTTATTCAAATTA 935254
Query 47808 NNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATT---TATA 47864
| ||| | | ||||| || || | || | | |
Sbjct 935255 CGTGTAACGGTTTTGGTGACCTCTTTGAGGCGCTTAAAGTCGTACGTTTTTTCGGGTGTG 935314
Query 47865 ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTA 47924
|||||| |||| | || || || || | || || ||||||||||||| || | |
Sbjct 935315 ACAAACATATTCAACGCGATTGAAGCCAAGTTGCACACAGCTACCTCATCAGGTGCTGAA 935374
Query 47925 TATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTA 47984
|||| | ||||| | ||||| ||||| ||| || || ||||| | ||| || ||||||
Sbjct 935375 TATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTACCAACATTCTGTTGATTA 935434
Query 47985 ttnnnnttGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGAT 48044
| ||||| || || || || | ||| | ||||| || || || | || |||
Sbjct 935435 CTCTTTCGATTACAAGCATCTTTATACAACATGTATGGTGTGCCGGTCTCCACTTGCGAT 935494
Query 48045 TCAATGATAGATTTCCAAACAGTCCTAGCCTTTA------TAACAGCTCTAGCTTTATTA 48098
||||| || ||||| | | || |||| || ||| | |||
Sbjct 935495 TCAATAATGCTAAACCAAAGACTTTGTGCTTTTACTTTCTTATTAGCACGTCCTT----- 935549
Query 48099 TCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCA 48158
| ||||| ||||| |||||| || || || || || || | || | || || ||
Sbjct 935550 -CCTGTTCATATTTCAGATATAATTTTTCGAACTCTTCACCCCATACTTCATGTAGACCG 935608
Query 48159 GGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAAT 48218
||||| | | |||||||| | ||||| || |||| || ||| | ||||||||
Sbjct 935609 GGACACTTGTGTGGACACATTAGCGACCAGTCTTCATTGGCTTCTACACGTTTCATAAAT 935668
Query 48219 ATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTA 48278
| ||| |||||||| | ||| ||| ||||| || | | | ||||| || ||| |
Sbjct 935669 AGATCAGGTATCCACAAAGCATAAAACAAATCTCTGGCGCGATGCTCTTCTTTCCCAGTG 935728
Query 48279 TTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCC 48338
|| | || | || | ||| | | |||||||||||||||||||| | || || ||
Sbjct 935729 TTTTTCTTCAAATCCAAAAATTGGAAAATATCAGCATGCCATGGTTCCAGGTAGATGGCA 935788
Query 48339 ATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACT 48398
| | | ||||| |||||| || |||||||| | ||| | || ||| || | |||
Sbjct 935789 AATGCGCCTGGACGTTTACCGCCACCTTGATCCACATAGCGTGCTACATTATTGAACACT 935848
Query 48399 CTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTA 48458
| ||||| || || | ||| |||||| | ||||| || |||| ||| | | || |
Sbjct 935849 CGCAACATAGGCACCAAACCGTTTGATGTGCCATTTGTACCCGCAATTGCAGTGCCTTTT 935908
Query 48459 GCTCTTAT---AT-TACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGC 48514
|| | ||| || ||| || | ||| ||||| || || ||| || || | ||
Sbjct 935909 GCACGTATGCAATGTAC--GTT--CAGACCAATACCCCCAGCAGATTTGGAAATCAATGC 935964
Query 48515 ACACCG-TTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAA 48573
||| | | | | | | | |||| || || || ||| || | ||| | | |||||
Sbjct 935965 ACATTGATGTGCCGATGTGA-AAATCCCATCAATGGAATCGTCCACCATGGTCAGTAGAA 936023
Query 48574 AACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAA 48633
| || |||| |||||| || || | | | |||| |||||||| |||||
Sbjct 936024 AGCATGATGACAATTGCGGCTGCTTGGTGGCAGCAGCGAATAGCGTTGGAGAAGCATGCG 936083
Query 48634 TAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGAT 48693
|||| | || || | ||| || |||||||| || | | |||||| || ||
Sbjct 936084 TAAAATAACGTTCGGAAAGCAAGTTGTATGTTTCGATTGCTGCATCTATGTCTTCGCCAT 936143
Query 48694 GTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTA 48753
||||||| || | |||||||||||||||| || |||| |||||||||||| |||||
Sbjct 936144 GTATACCGATGGCAACACGCATTAACATATGCTGTGGTCGCTCAACAATTTTGCCATTTA 936203
Query 48754 TTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGT 48813
||| | | ||| || ||| | ||||||||||||||||| || || ||| |||
Sbjct 936204 ATTTTAGCAAATAGGAACGTTCAAGAGTTTTAAAACCAAAATAATTATAACCAAAATCGC 936263
Query 48814 TATCATTAATAATTGATGAATTTA 48837
|||| |||||| | || ||||
Sbjct 936264 GGTCATAAATAATGGCAGAGTTTA 936287
>seq2718
Length=1670031
Score = 273 bits (302), Expect = 2e-68
Identities = 486/704 (69%), Gaps = 10/704 (1%)
Strand=Plus/Minus
Query 18795 ATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAAC 18854
||| || ||||||| ||||| | ||| | | |||||||| || |||| || ||
Sbjct 71488 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAGATTCAC 71429
Query 18855 AGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATAC 18914
|| | || || || | ||||| || || || || || || || || || || | |
Sbjct 71428 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTAT---TTC 71372
Query 18915 AACTCTATCTTCATTAGGAGGGTATAGAAG---ATGTTTAAACATCAAACATGCAAAATC 18971
||| || |||||| || | | | | ||||| |||||||||||||| || ||
Sbjct 71371 AACAATACGCTCATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACATGCGAAGTC 71312
Query 18972 ACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAG 19031
|||||| |||||||| |||| || | |||||| |||||||| || || ||||| |
Sbjct 71311 ACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCATTAA 71252
Query 19032 TCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTAC 19091
|| | ||| || | |||||| || |||||||| ||| ||||| |||||||| ||
Sbjct 71251 ACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAAATACCTTCAAC 71192
Query 19092 TGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAG 19151
|| ||||| |||| || | ||| ||| | | || || | |||||| ||
Sbjct 71191 GGCAGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTTCGAAGAAATCCAAGCAAG 71132
Query 19152 TGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACAT 19211
|||||||| ||||| ||||| |||||||||||||||| ||| |||| | |
Sbjct 71131 CGCCCAATCTGCCTTACGCTTTACGGCAGGCATTGTCTCTATAGCATTGAATAAGCAATT 71072
Query 19212 ACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAAT 19271
| | | | || |||| ||||| ||| || |||| || |||||||| ||||| |
Sbjct 71071 CCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCAGAATGCAC 71012
Query 19272 ATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACT 19331
||| || || || || |||||||| || || || | ||| ||||| | || |||||
Sbjct 71011 ATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACTTCCTG 70952
Query 19332 ACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAA 19391
|| || | ||| || | ||||||||| || || |||||| || || ||||| |||||
Sbjct 70951 GCAGAAGCGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAGGCTAA 70892
Query 19392 TACATGTTTAATAAAATGTTTTTCA-TCTGAGGTTAATGTAT-TCCAATCATTAATATCT 19449
|| || |||||||||| |||| | | || | | | | |||||||| ||||||
Sbjct 70891 CACGTGGGAAATAAAATGTCGTTCATTATCAG--TGAGGCGTGCCCAATCATCCATATCT 70834
Query 19450 TTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493
||||| | ||||||||| || |||||||| || || || |||||
Sbjct 70833 TTAGAAAGATCTACTTCCTCTACTGTCCAGAACGATGCTTCTGC 70790
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562085570853840
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