Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq1558 147 2e-30
seq2605 143 2e-29
seq603 141 7e-29
seq2707 104 2e-17
>seq1558
Length=2163639
Score = 147 bits (162), Expect = 2e-30
Identities = 162/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313
||| | ||| ||||| ||||| || || ||||| || ||||| |||| | || | |
Sbjct 2034163 ACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACC 2034104
Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373
||| ||||||||||| || || || ||||||||||||||||| || || ||||| |||||
Sbjct 2034103 ATCTTCCAATTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGGATGCCCTCTTT 2034044
Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433
|||||| ||||| ||| ||| |||| | |||||||| | || || || | || |
Sbjct 2034043 ATCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTAAT 2033984
Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || || ||||| ||||| || || ||||||||
Sbjct 2033983 GGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 2033948
>seq2605
Length=276952
Score = 143 bits (158), Expect = 2e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| ||||| | ||| | |||||||| | ||||| ||||| || ||||| || || ||
Sbjct 242123 CCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCC 242064
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| || | |||| ||||||||||| || ||||| || | |||||||||||| || |||
Sbjct 242063 AATGTGCGACCATCTTCCAATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGGGGA 242004
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|| ||||| |||||||||||||| || ||| ||| | ||| || || | || ||
Sbjct 242003 ATTCCTTCCTTATCTTGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGCTCAACC 241944
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|||||||||| || || || || | |||||||| || || |||||
Sbjct 241943 TCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAAAATTTGCAT 241897
>seq603
Length=780983
Score = 141 bits (156), Expect = 7e-29
Identities = 168/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| || | ||| |||| ||||||||| || || ||||| || || ||||| || ||||
Sbjct 746024 CCACCACGTAAGCGTAGAACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCGGAC 745965
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| || | |||| ||||| || || || || || |||||||| |||||||| || ||
Sbjct 745964 AGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGG 745905
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|| ||||| |||||||||||||| ||| ||| | || | || || || | || ||
Sbjct 745904 ATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACC 745845
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|| | ||||| ||||| || || |||||||| || || |||||||||
Sbjct 745844 TCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCATG 745797
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
||||| | | ||||| || ||||| || || ||||| || ||||||||||| ||||
Sbjct 747779 CCTCCGCGAAGACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGAC 747720
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| ||| | |||| || | |||||| || ||||| |||||||| |||||||| || |||
Sbjct 747719 AAAGTACGTCCATCCTCAAGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTGGA 747660
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
||||||||||||||||| || || || ||| | || | || || || | || |||
Sbjct 747659 ATGCCTTCTTTATCTTGGATCTTAGCCTTAACATTCTCAATGGTATCTGAGGGCTCGACT 747600
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| | |||| |||||||| || | || || || || || |||||
Sbjct 747599 TCCAAGGTGATGGTTTTGCCAGTGAGGGTCTTAACGAAGATTTGCAT 747553
Score = 127 bits (140), Expect = 2e-24
Identities = 139/185 (75%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
||||| || ||||| ||||| || || || ||||| |||| | || | |||| |||
Sbjct 747533 ACTAAGTGGAGGGTTGATTCCTTCTGAATGTTGTAGTCGGACAAGGTACGTCCATCCTCC 747474
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
|||||||| || ||||| |||||||| |||||||| || || || ||||| ||||||||
Sbjct 747473 AATTGCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCCTTATCTTGG 747414
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
||||| ||| ||| | || | |||||||| | || ||||| | |||| ||||||
Sbjct 747413 ATTTTGGCTTTGACATTCTCAATGGTGTCAGATGGCTCAACTTCCAAGGTGATGGTTTTG 747354
Query 101441 CCGGT 101445
|| ||
Sbjct 747353 CCAGT 747349
>seq2707
Length=1765650
Score = 104 bits (114), Expect = 2e-17
Identities = 126/172 (73%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 13761 CATAACCGTTGGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGA 13820
|||||||||||| ||| | ||||| ||||| ||||||||||| ||||| || || |
Sbjct 1307276 CATAACCGTTGGAATCTCTGCCATCTAAACTATATTTGTCGTTTAAATAAATTGCAATTT 1307217
Query 13821 TTAAAGCCACTGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCA 13880
|| ||| || || || | |||||||| | ||| |||||||||||||| | | |
Sbjct 1307216 CTAGCGCCTCTTCTGGTGAGTTGGACCATTCCAGTATCTTTTTAGCCCAATACTTACGAA 1307157
Query 13881 TATATCCGTGCATTTTGCCTTGCGTTTTAAGCTGTGTCTGAGCAGCGTTCCA 13932
| |||||||||||||||||| || ||| | |||||||| |||||
Sbjct 1307156 GAAATCCGTGCATTTTGCCTTCACGAACCAGTTGTATTTGAGCAGCATTCCA 1307105
Score = 84.2 bits (92), Expect = 2e-11
Identities = 124/173 (72%), Gaps = 2/173 (1%)
Strand=Plus/Minus
Query 13761 CATAACCGTTGGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGA 13820
|||| ||||| ||||| ||||| ||||||||||| || || ||| | || || |
Sbjct 1303408 CATATCCGTTTGGATCTAAACCATCTAAACTGTATTTATCATTCAAAAAAATTGCTGTTT 1303349
Query 13821 TTAAAGCCACTGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCA 13880
|||||| | ||||| | |||||| || | ||| ||||| |||||||| || | ||
Sbjct 1303348 CTAAAGCAGCATCAGGCGTAGAAGACCACTCCAGTATCTTTTTTGCCCAATACATACGCA 1303289
Query 13881 TATATCCGTGCATTTTGCCTTGCGTTTTA-AGCTGTGTCTGAGCAGCGTTCCA 13932
| | || ||||||||||||| | | | | | ||| ||| || ||||||||
Sbjct 1303288 GAAAACCATGCATTTTGCCTT-CATGTAACAACTGCAGCTGCGCTGCGTTCCA 1303237
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396262433200242
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |