Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq2558 123 2e-23
seq603 107 1e-18
seq2605 98.7 8e-16
seq1558 96.9 3e-15
>seq2558
Length=2100711
Score = 123 bits (136), Expect = 2e-23
Identities = 163/226 (72%), Gaps = 0/226 (0%)
Strand=Plus/Minus
Query 9067 GGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAG 9126
||||| || || | ||||| || ||||| ||||| | || || ||||| | ||
Sbjct 1047280 GGATAGAAAATGCGCTCACAGATAAATTGTGCAATTCGATCTCCTCGTTTCACTTCGAAA 1047221
Query 9127 TCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATC 9186
||| || |||||||| || | || || |||| |||||| | ||| || ||||| |
Sbjct 1047220 TCTTCATCTGAATGATTAAATAATACAACGCCCAAGTTACCACGGTAGTCTTCATCTACA 1047161
Query 9187 ACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGA 9246
|| |||||||| || || || |||| ||| || |||||||||||||| ||||| | ||
Sbjct 1047160 ACTCCAGCACCAACATCTATAAAGTTCTTAACAGCTAGTCCAGAGCGTGGCGCAACACGT 1047101
Query 9247 CCGTAGCATCCCACCGGTAATTGCACCCGCAAGTCGGTCATGACCA 9292
||||| ||||| | |||| ||| || |||| || ||| | ||||
Sbjct 1047100 CCGTAAGATCCCTCTGGTACTTGTACTTGCAAATCAGTCTTCACCA 1047055
>seq603
Length=780983
Score = 107 bits (118), Expect = 1e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
|| |||||||| ||| || || |||||||| || || || || | || | || |||
Sbjct 746006 ACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCGGACAGTGTGCGTCCATCCTCC 745947
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
||||| || || || || |||| || |||||||| | ||| | || ||||| || |
Sbjct 745946 AACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGA 745887
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
|| || ||| ||| | | | || || | ||| ||||||| || || ||||||
Sbjct 745886 ATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTT 745827
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||||||||||||| || |||||||||||
Sbjct 745826 CCCGTCAAAGTTTTGACGAAAATCTGCAT 745798
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
||| || | ||| || | |||||||| || || ||| || || || |||||||| ||
Sbjct 745797 GCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGA 745738
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658
||| | || |||| |||| || ||||||||||| || | || |||||||| | |||
Sbjct 745737 CAGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGG 745678
Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718
| || || ||||| |||||| ||| ||| | | || || || | || ||
Sbjct 745677 GATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAAC 745618
Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||| || || || || || ||||| || || || || || |||||
Sbjct 745617 CTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 745570
>seq2605
Length=276952
Score = 98.7 bits (108), Expect = 8e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597
|||| || || || || | || ||||| | || |||||| |||||||| || ||||
Sbjct 242125 CGCCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAG 242066
Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657
| | ||| | || ||||| ||||| |||||||| || || ||||||||||| | ||
Sbjct 242065 CCAATGTGCGACCATCTTCCAATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGGG 242006
Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717
||| || ||||| || ||| || || ||| | | || || || | ||| |
Sbjct 242005 GAATTCCTTCCTTATCTTGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGCTCAA 241946
Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||| | || || || || ||||| | |||||||| ||||| |||||
Sbjct 241945 CCTCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAAAATTTGCAT 241897
>seq1558
Length=2163639
Score = 96.9 bits (106), Expect = 3e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||| |||||||| || || ||| ||||| || ||||| || || | | |||
Sbjct 2034165 AGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGA 2034106
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || ||||| ||||| ||||| || |||| ||||||||||| | ||| | ||||||
Sbjct 2034105 CCATCTTCCAATTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGGATGCCCTCT 2034046
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
|| || || || ||| ||| | | | || || | ||| ||||| | |||
Sbjct 2034045 TTATCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTA 2033986
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || || || ||||| || |||||||||||
Sbjct 2033985 ATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 2033948
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380922251309838
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |