Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_019945.1
Length=132978
Score E
Sequences producing significant alignments: (Bits) Value
seq1558 98.7 8e-16
seq2605 91.5 1e-13
>seq1558
Length=2163639
Score = 98.7 bits (108), Expect = 8e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610
|||||||| || || || ||||| ||||| ||||| ||||||||| || || |||
Sbjct 2033945 AAAATGCAGATTTTCGTCAAAACCTTAACTGGTAAGACCATTACCTTAGAGGTCGAGCCT 2034004
Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670
|| || || | | || |||| |||||| || |||||||| | ||| ||||
Sbjct 2034005 TCTGACACCATCGAAAATGTCAAAGCTAAAATCCAAGATAAAGAGGGCATCCCCCCAGAT 2034064
Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730
|||||| | | ||||| || || || |||||||||||| | || || |||| ||
Sbjct 2034065 CAACAGCGTTTGATCTTCGCCGGAAAGCAATTGGAAGATGGTCGCACCTTGTCCGACTAC 2034124
Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGT 28762
||||| ||||| || || || || || ||||
Sbjct 2034125 AACATCCAAAAGGAGTCAACCCTCCATTTGGT 2034156
>seq2605
Length=276952
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 28542 GATTGTGTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAA 28601
|||||| | ||||||||| || |||||||| | |||||||| ||||| || ||
Sbjct 241885 GATTGTTCAGCAATGCAAATTTTCGTAAAAACCCTTACGGGTAAGACCATCACTCTTGAG 241944
Query 28602 ACGGAACCTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTG 28661
|| ||||| || || | | || | ||| ||||| || || || ||| |
Sbjct 241945 GTTGAGCCTTCGGATACTATTGAACATGTTAAGGCCAAAATTCAAGATAAGGAAGGAATT 242004
Query 28662 CCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATG 28721
||| ||||||||| | || || ||||| || || |||||||||||| | || ||
Sbjct 242005 CCCCCTGATCAACAGCGTCTAATTTTTGCCGGAAAGCAATTGGAAGATGGTCGCACATTG 242064
Query 28722 GCCGATTATAACATTCAAAAAGAATCTACTCTGCA 28756
|| || ||||| ||||| ||||| ||||| ||||
Sbjct 242065 GCTGACTATAATATTCAGAAAGAGTCTACATTGCA 242099
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425387659642974
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |