Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq2681 100 3e-16 >seq2681 Length=201357 Score = 100 bits (110), Expect = 3e-16 Identities = 172/244 (70%), Gaps = 8/244 (3%) Strand=Plus/Plus Query 138182 TACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATG 138241 ||| ||||||||||| | |||||||| || || ||||| || || ||||| |||||||| Sbjct 78201 TACGCCAATAGGACCCATACCAGGACCGCCCCCGCCATGCGGTATGCAGAAAGTCTTATG 78260 Query 138242 TAAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGC 138301 || ||| | ||| | ||||| ||||| || | || |||||| || ||||| Sbjct 78261 TAGATTCAAGTGAGAGACATCACTGCCATAATCCCCGGGACGACATAGACCCACTTGTGC 78320 Query 138302 ATTTAGATTTGCACCATCGAGATATACCTGACCACCA---TTGT-CATGAACGATCTTAC 138357 ||| | ||| || || || | ||||||||||| ||| |||| |||| |||| | Sbjct 78321 ATTCATATTAGCGCCGTCCAAGTATACCTGACCGCCATGTTTGTGGATGA--GATCGCAT 78378 Query 138358 ATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATAC 138417 ||||| | | || | ||||||||||| || |||||||| || ||||| | || Sbjct 78379 ATATCAG-CAACAGTCT-CCTCAAATACACCCATTGTGGATGGATAGGTGATCATCAGAC 78436 Query 138418 ATGA 138421 | || Sbjct 78437 AGGA 78440 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 139260 AGTCCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGT 139319 || ||||| | ||| || || | || || | |||||||||| ||||||||||| || Sbjct 79309 AGCCCATCGGGACCGTGGTAGACCGCGTACATAGCAGACATATTGGCGAGCAGTGCCTGC 79368 Query 139320 GCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGT 139379 || ||||| ||||| || ||||| ||||| | | ||||||||||| | || || | | Sbjct 79369 GCGGTGCAAATGTTGCTAGTTGCCTTGTCACGACGTATATGCTGCTCACGTGTCTGCAAT 79428 Query 139380 GCTAATCTGTATGCAGGATTGCCTTC 139405 || | | ||| ||| |||||| || Sbjct 79429 GCCAGGCGGTAGGCATCATTGCCGTC 79454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578974472891120