Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3107 122 1e-22 seq2 91.5 2e-13 >seq3107 Length=1323484 Score = 122 bits (134), Expect = 1e-22 Identities = 550/861 (64%), Gaps = 23/861 (3%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 |||||| | ||||| ||||| || || ||||| || || || |||||||| ||| | | Sbjct 936180 CCACAGCATATGTTAATGCGTGTTGCCATCGGTATACATGGCGAAGACATAGATGCAGCA 936121 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 | || |||||| || | | ||| || || || | || || | ||||| || ||| Sbjct 936120 ATCGAAACATACAACTTGCTTTCCGAACGTTATTTTACGCATGCTTCTCCAACGCTATTC 936061 Query 75332 AATGCTGGTACACCAAGA--CCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 75389 ||||| ||||||| ||||| |||| ||||| || | ||| ||| | Sbjct 936060 GCTGCTGC--CACCAAGCAGCCGCAATTGTCATCATGCTTTCTACTGACCATGGTGGACG 936003 Query 75390 ACTCAATCAACGGTATCT----AT-GGAAC-TCTTACGGAGTGTGCGCAAATCTCAAAGT 75443 | || || | || || | || || || || | ||||| || || || | Sbjct 936002 ATTCCATTGATGGGATTTTCACATCGGCACATC------AATGTGCATTGATTTCCAAAT 935949 Query 75444 GGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGG 75503 |||||||||||||| || || | ||| | | || || || ||| || Sbjct 935948 CTGCTGGGGGTATTGGTCTGAACGTACATTGCATACGTGCAAAAGGCACTGCAATTGCGG 935889 Query 75504 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 75563 | |||||||| |||| | ||| | | || ||| | || || || || ||| | Sbjct 935888 GTACAAATGGCACATCAAACGGTTTGGTGCCTATGTTGCGAGTGTTCAATAATGTAGCAC 935829 Query 75564 GCTATGTAAATCAAGCGGGGCGT---CG-CAAGGGGTCCATCGCGGTCTACTTGGAACCA 75619 ||||||| |||||| || || || | ||| | | | || ||||| |||||||| Sbjct 935828 GCTATGTGGATCAAGGTGGCGGTAAACGTCCAGGCG-CATTTGCCATCTACCTGGAACCA 935770 Query 75620 TGGCATGCCGATATCATGGAGTTCCTTGAGTT-ACGACTCAACCAAGGTGACGAAGAGGC 75678 |||||||| ||||| | | || | || || | || ||| || | |||||| Sbjct 935769 TGGCATGCTGATATTTTCCAATTTTTGGATTTGAAGAAA-AACACTGGGAAAGAAGAGCA 935711 Query 75679 TCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGA 75738 ||| |||||| | |||| | ||||||| || || || || ||||| || || || Sbjct 935710 TCGCGCCAGAGATTTGTTTTATGCTTTGTGGATACCTGATCTATTTATGAAACGTGTAGA 935651 Query 75739 GGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGT 75798 | || | ||||| || | |||||| ||||| || ||||| || | Sbjct 935650 AGCCAATGAAGACTGGTCGCTAATGTGTCCACACAAGTGTCCCGGTCTACATGAAGTATG 935591 Query 75799 GGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGAC 75858 |||||| ||||| ||| | || || |||||| |||| || | || ||| || Sbjct 935590 GGGTGAAGAGTTCGAAAAATTATATCTGAAATATGAACAGGAAGGACGTGCTAATAAGAA 935531 Query 75859 TGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACC 75918 ||| ||| | ||||| ||| | |||| || |||||| || ||||| Sbjct 935530 AGTAAAAGCACAAAGTCTTTGGTTTAGCATTATTGAATCGCAAGTGGAGACCGGCACACC 935471 Query 75919 ATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAAT 75978 ||| ||| | || || ||||||||||| |||||||| ||| ||||| | || ||||| Sbjct 935470 ATACATGTTGTATAAAGATGCTTGTAATCGAAAGAGTAATCAACAGAATGTTGGTACAAT 935411 Query 75979 CAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGT 76038 ||| | ||| | || || |||||| | || || ||| |||||| ||||| Sbjct 935410 TAAGTGTAGTAATTTATGTACCGAAATTGTGGAATATTCAGCACCTGATGAGGTAGCTGT 935351 Query 76039 TTGCAATTTGGCATCAATCGC 76059 ||||| ||||| |||||||| Sbjct 935350 GTGCAACTTGGCTTCAATCGC 935330 >seq2 Length=5358759 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 175350 CGCGGGTGAATCAAATGTCCCATTCATCCAGTGC-TCTGCCGCAAACTTTGTGGAGATGT 175408 ||| |||||| ||||||| || || || |||| || | | | ||| ||||||||| Sbjct 1535306 CGCTGGTGAAGCAAATGTTCCTTTTATA-AGTGTATCCGGTTCCGAGTTTTTGGAGATGT 1535248 Query 175409 TTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAAC 175468 |||||||||| ||| | | ||||||| ||| | ||| ||| || || | || || Sbjct 1535247 TTGTTGGTGTAGGTCCGTCACGGGTTCGAGATATGTTTTCAATGGCTCGAAAGCATGCAC 1535188 Query 175469 CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGG 175505 |||||||| | || |||||||| ||||||||||| || Sbjct 1535187 CATGTATTTTGTTTATTGATGAAATTGATGCGGTTGG 1535151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596544946761280