Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq3107 122 1e-22
seq2 91.5 2e-13
>seq3107
Length=1323484
Score = 122 bits (134), Expect = 1e-22
Identities = 550/861 (64%), Gaps = 23/861 (3%)
Strand=Plus/Minus
Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271
|||||| | ||||| ||||| || || ||||| || || || |||||||| ||| | |
Sbjct 936180 CCACAGCATATGTTAATGCGTGTTGCCATCGGTATACATGGCGAAGACATAGATGCAGCA 936121
Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331
| || |||||| || | | ||| || || || | || || | ||||| || |||
Sbjct 936120 ATCGAAACATACAACTTGCTTTCCGAACGTTATTTTACGCATGCTTCTCCAACGCTATTC 936061
Query 75332 AATGCTGGTACACCAAGA--CCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 75389
||||| ||||||| ||||| |||| ||||| || | ||| ||| |
Sbjct 936060 GCTGCTGC--CACCAAGCAGCCGCAATTGTCATCATGCTTTCTACTGACCATGGTGGACG 936003
Query 75390 ACTCAATCAACGGTATCT----AT-GGAAC-TCTTACGGAGTGTGCGCAAATCTCAAAGT 75443
| || || | || || | || || || || | ||||| || || || |
Sbjct 936002 ATTCCATTGATGGGATTTTCACATCGGCACATC------AATGTGCATTGATTTCCAAAT 935949
Query 75444 GGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGG 75503
|||||||||||||| || || | ||| | | || || || ||| ||
Sbjct 935948 CTGCTGGGGGTATTGGTCTGAACGTACATTGCATACGTGCAAAAGGCACTGCAATTGCGG 935889
Query 75504 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 75563
| |||||||| |||| | ||| | | || ||| | || || || || ||| |
Sbjct 935888 GTACAAATGGCACATCAAACGGTTTGGTGCCTATGTTGCGAGTGTTCAATAATGTAGCAC 935829
Query 75564 GCTATGTAAATCAAGCGGGGCGT---CG-CAAGGGGTCCATCGCGGTCTACTTGGAACCA 75619
||||||| |||||| || || || | ||| | | | || ||||| ||||||||
Sbjct 935828 GCTATGTGGATCAAGGTGGCGGTAAACGTCCAGGCG-CATTTGCCATCTACCTGGAACCA 935770
Query 75620 TGGCATGCCGATATCATGGAGTTCCTTGAGTT-ACGACTCAACCAAGGTGACGAAGAGGC 75678
|||||||| ||||| | | || | || || | || ||| || | ||||||
Sbjct 935769 TGGCATGCTGATATTTTCCAATTTTTGGATTTGAAGAAA-AACACTGGGAAAGAAGAGCA 935711
Query 75679 TCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGA 75738
||| |||||| | |||| | ||||||| || || || || ||||| || || ||
Sbjct 935710 TCGCGCCAGAGATTTGTTTTATGCTTTGTGGATACCTGATCTATTTATGAAACGTGTAGA 935651
Query 75739 GGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGT 75798
| || | ||||| || | |||||| ||||| || ||||| || |
Sbjct 935650 AGCCAATGAAGACTGGTCGCTAATGTGTCCACACAAGTGTCCCGGTCTACATGAAGTATG 935591
Query 75799 GGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGAC 75858
|||||| ||||| ||| | || || |||||| |||| || | || ||| ||
Sbjct 935590 GGGTGAAGAGTTCGAAAAATTATATCTGAAATATGAACAGGAAGGACGTGCTAATAAGAA 935531
Query 75859 TGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACC 75918
||| ||| | ||||| ||| | |||| || |||||| || |||||
Sbjct 935530 AGTAAAAGCACAAAGTCTTTGGTTTAGCATTATTGAATCGCAAGTGGAGACCGGCACACC 935471
Query 75919 ATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAAT 75978
||| ||| | || || ||||||||||| |||||||| ||| ||||| | || |||||
Sbjct 935470 ATACATGTTGTATAAAGATGCTTGTAATCGAAAGAGTAATCAACAGAATGTTGGTACAAT 935411
Query 75979 CAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGT 76038
||| | ||| | || || |||||| | || || ||| |||||| |||||
Sbjct 935410 TAAGTGTAGTAATTTATGTACCGAAATTGTGGAATATTCAGCACCTGATGAGGTAGCTGT 935351
Query 76039 TTGCAATTTGGCATCAATCGC 76059
||||| ||||| ||||||||
Sbjct 935350 GTGCAACTTGGCTTCAATCGC 935330
>seq2
Length=5358759
Score = 91.5 bits (100), Expect = 2e-13
Identities = 116/157 (74%), Gaps = 2/157 (1%)
Strand=Plus/Minus
Query 175350 CGCGGGTGAATCAAATGTCCCATTCATCCAGTGC-TCTGCCGCAAACTTTGTGGAGATGT 175408
||| |||||| ||||||| || || || |||| || | | | ||| |||||||||
Sbjct 1535306 CGCTGGTGAAGCAAATGTTCCTTTTATA-AGTGTATCCGGTTCCGAGTTTTTGGAGATGT 1535248
Query 175409 TTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAAC 175468
|||||||||| ||| | | ||||||| ||| | ||| ||| || || | || ||
Sbjct 1535247 TTGTTGGTGTAGGTCCGTCACGGGTTCGAGATATGTTTTCAATGGCTCGAAAGCATGCAC 1535188
Query 175469 CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGG 175505
|||||||| | || |||||||| ||||||||||| ||
Sbjct 1535187 CATGTATTTTGTTTATTGATGAAATTGATGCGGTTGG 1535151
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596544946761280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |