Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq2605 205 2e-47
seq603 129 1e-24
seq1558 127 4e-24
>seq2605
Length=276952
Score = 205 bits (226), Expect = 2e-47
Identities = 182/228 (80%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193
|||||||| | |||||||| | ||||||||||| |||||| |||||||||||| |
Sbjct 242123 CCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCC 242064
Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253
|| || | | ||| || ||||| |||||||||||||||| | |||||||||||| ||
Sbjct 242063 AATGTGCGACCATCTTCCAATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGGGGA 242004
Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313
|||||||| |||||||| ||||||| || | || | ||||||||| |||| ||||||
Sbjct 242003 ATTCCTTCCTTATCTTGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGCTCAACC 241944
Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361
|| ||||| || || ||||| || || |||||||| || |||||||||
Sbjct 241943 TCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAAAATTTGCATT 241896
>seq603
Length=780983
Score = 129 bits (142), Expect = 1e-24
Identities = 170/236 (72%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| |||||||| | || || || || | ||| | || | || || |||||||
Sbjct 746033 ATTTGCATACCACCACGTAAGCGTAGAACTAAATGTAGAGTGGATTCCTTCTGAATATTA 745974
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
|||||||| | || | ||| || || ||||| || || ||||| || | ||||||
Sbjct 745973 TAGTCGGACAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGA 745914
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|| || || |||||||| |||||||| ||||| | ||| | ||| ||| |||||||||
Sbjct 745913 TCTGGGGGGATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTCTCAATGGTATCGGAA 745854
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
| |||||| || | ||| || ||||| || || | ||||| || || || |||||
Sbjct 745853 GGCTCAACCTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 745798
Score = 127 bits (140), Expect = 4e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
||||| |||| ||| | ||||| ||| || || || || ||||| | || |
Sbjct 745784 CGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAGAGTGCGTCCG 745725
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || | |||||| |||||||| ||||| | |||||||| || || |||||||||||
Sbjct 745724 TCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTG 745665
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
||||| || || | ||| | |||| |||||||||||| | ||||| || ||||| ||
Sbjct 745664 TCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATG 745605
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
|| || || || | || || || || |||||||||||
Sbjct 745604 GTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 745567
Score = 120 bits (132), Expect = 5e-22
Identities = 159/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| |||||||| | ||| ||||| || | || | || | || || ||| ||
Sbjct 747560 ATTTGCATACCACCACGCAAGCGAAGGACTAAGTGGAGGGTTGATTCCTTCTGAATGTTG 747501
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
|||||||| || || | ||| || ||||| || ||||||||||| || | ||||||
Sbjct 747500 TAGTCGGACAAGGTACGTCCATCCTCCAATTGCTTGCCGGCAAAAATCAAACGTTGTTGA 747441
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|| || || |||||||| |||||||| ||||||| ||| | ||| ||| || || ||
Sbjct 747440 TCTGGTGGGATTCCTTCCTTATCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCAGAT 747381
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTT 193345
| ||||||||| | || || ||||| || || || || ||
Sbjct 747380 GGCTCAACTTCCAAGGTGATGGTTTTGCCAGTGAGGGTCTT 747340
Score = 109 bits (120), Expect = 1e-18
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
|| || |||| ||| | ||| | || || ||||| |||||||| || || | |
Sbjct 747767 CGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGACAAAGTACGTCCA 747708
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || | ||| || ||||||||||| || | |||||||| || || || |||||||||
Sbjct 747707 TCCTCAAGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCTTTA 747648
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
||||| || || | || | ||| ||| ||||| || | ||| ||||| | || ||
Sbjct 747647 TCTTGGATCTTAGCCTTAACATTCTCAATGGTATCTGAGGGCTCGACTTCCAAGGTGATG 747588
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||| || || || || || || || ||||||||
Sbjct 747587 GTTTTGCCAGTGAGGGTCTTAACGAAGATTTGCAT 747553
>seq1558
Length=2163639
Score = 127 bits (140), Expect = 4e-24
Identities = 168/233 (72%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|||||||| | | || || |||| ||| | || | ||| || || || ||||||
Sbjct 2034177 ATACCACCACGAAGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCG 2034118
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
|| || || | | ||| || ||||| |||||||| || || || | ||||||||| ||
Sbjct 2034117 GACAAGGTGCGACCATCTTCCAATTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGG 2034058
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || || ||||||||||| ||||| | ||| | |||| || || || |||| |||
Sbjct 2034057 GGGATGCCCTCTTTATCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCG 2033998
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
|| |||| || || || ||||| |||| ||||| || || || ||||||||
Sbjct 2033997 ACCTCTAAGGTAATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCATTTT 2033945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899617221781920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |