Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2718 172 8e-38 seq603 123 4e-23 seq1558 111 2e-19 >seq2718 Length=1670031 Score = 172 bits (190), Expect = 8e-38 Identities = 482/731 (66%), Gaps = 21/731 (3%) Strand=Plus/Minus Query 17989 ATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAA 18048 ||| || |||||||||| ||| | ||||| | | |||||||||||| | ||| | | Sbjct 71488 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAGATTCAC 71429 Query 18049 AGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTAT 18108 || | ||| ||| | | ||||| | ||| || | ||||| || ||||| | | Sbjct 71428 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTATTTCAAC 71369 Query 18109 --TACCCTAGATT--TTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGCAA 18164 ||| || ||| |||| ||| | |||| || || || || | |||| || | Sbjct 71368 AATACGCTC-ATTACTTGG---TTTTTGTATTAAATG-TTGGAACATCA--AACATGCGA 71316 Query 18165 AATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCA 18224 | ||| || | || ||||||| || |||| ||| || ||| || || || |||| Sbjct 71315 AGTCACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCA 71256 Query 18225 TTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCT 18284 ||| ||| | ||| || ||||| || ||||| || ||||| | | ||||| ||||| | Sbjct 71255 TTAAACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAAATACCTT 71196 Query 18285 CAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGTA-TCCAT 18343 ||||| || || || |||| | |||| |||| || || | || | |||| Sbjct 71195 CAACGGCAGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTT-CGAAGAAATCCAA 71137 Query 18344 TTTTGTGCCCATTCT-CCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAA 18402 | ||||| ||| |||| || || || ||||||||||||| || || Sbjct 71136 GCAAGCGCCCAATCTGCCTTACGCTTTACGGCA-GGCATTGTCTCTATAGCATTGAATAA 71078 Query 18403 ATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGA 18462 || ||| ||| || || || ||||| || || ||||| | |||||||||||| Sbjct 71077 GCAATTCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCAGA 71018 Query 18463 ATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAAT 18522 ||| | | ||||| || || ||||| | ||| || | | ||||| | ||| | Sbjct 71017 ATGCACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGAC 70958 Query 18523 CTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAA 18582 || | || | ||| || | ||| ||||| || ||||| |||| | |||||||| Sbjct 70957 TTCCTGGCAGAAGCGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAA 70898 Query 18583 TGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCATCTAT 18642 || || || | ||| |||||| ||||||||| |||| ||| ||||| || Sbjct 70897 GGCTAACACGTGGGAAATAAAATGTCGTTCATTATCAGTGAGGCGTGCCCAATCATCCAT 70838 Query 18643 ATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACAT 18702 |||||| || ||||| ||||| || |||||| || |||| ||| ||||| || Sbjct 70837 ATCTTTAGAAAGATCTACTTCCTCTACTGTCCAGAACGATGCTTCTGCCTG------CAA 70784 Query 18703 TTTATAAATAT 18713 | ||||||||| Sbjct 70783 TATATAAATAT 70773 >seq603 Length=780983 Score = 123 bits (136), Expect = 4e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || |||| || | ||||| ||||| || || || |||||||| || Sbjct 747553 ATGCAAATCTTCGTTAAGACCCTCACTGGCAAAACCATCACCTTGGAAGTCGAGCCCTCA 747612 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || ||| || ||||||||||||||||| || ||||| ||| Sbjct 747613 GATACCATTGAGAATGTTAAGGCTAAGATCCAAGATAAAGAAGGCATTCCACCAGATCAA 747672 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||||| |||||| ||||| || || ||| | ||||| || || || ||| Sbjct 747673 CAACGTTTGATTTTTGCCGGCAAGCAACTTGAGGATGGACGTACTTTGTCCGACTACAAT 747732 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 ||| || || |||| || ||||| ||| || Sbjct 747733 ATACAGAAGGAATCGACACTCCATTTGGTGCTA 747765 Score = 107 bits (118), Expect = 3e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| || | || || |||||||| || || || || | || || ||| Sbjct 745567 AAAATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCA 745626 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| |||| ||| || ||| ||| || ||||| |||||||| || || ||||| Sbjct 745627 TCCGATACTATTGAAAATGTTAAAGCTAAGATTCAAGACAAAGAAGGAATCCCCCCAGAT 745686 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | || || | ||||||||| || || ||||| | ||| | || ||||| Sbjct 745687 CAACAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGCACTCTGTCCGATTAC 745746 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || || ||| | || |||||||| || Sbjct 745747 AACATCCAGAAGGAGTCTACACTTCATTTGGT 745778 >seq1558 Length=2163639 Score = 111 bits (122), Expect = 2e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || || | ||||| || ||||| || || ||||| ||||| ||||| | Sbjct 2033945 AAAATGCAGATTTTCGTCAAAACCTTAACTGGTAAGACCATTACCTTAGAGGTCGAGCCT 2034004 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| | || ||| || ||| |||||| ||||||||||| ||||| || ||||| Sbjct 2034005 TCTGACACCATCGAAAATGTCAAAGCTAAAATCCAAGATAAAGAGGGCATCCCCCCAGAT 2034064 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 ||||| | ||||| | ||||| ||||| | |||||| | || || || || || Sbjct 2034065 CAACAGCGTTTGATCTTCGCCGGAAAGCAATTGGAAGATGGTCGCACCTTGTCCGACTAC 2034124 Query 156000 AATATATCCAAA--GAGGCGACGCTTCATTTAGT 156031 | | ||||||| ||| | || || ||||| || Sbjct 2034125 A--ACATCCAAAAGGAGTCAACCCTCCATTTGGT 2034156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731841755389600