Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2718 194 3e-44 seq2605 161 2e-34 seq1558 147 4e-30 seq603 141 2e-28 >seq2718 Length=1670031 Score = 194 bits (214), Expect = 3e-44 Identities = 464/702 (66%), Gaps = 13/702 (2%) Strand=Plus/Minus Query 49655 ATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATTTAAA 49714 ||| || |||||||| | ||| | ||||||| || ||||||||||| | || || | Sbjct 71488 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAGATTCAC 71429 Query 49715 TGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatcataat 49774 || || || ||| | ||||| | || |||| ||||||| |||||| || Sbjct 71428 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTATTTCAAC 71369 Query 49775 tata---ttattttttgataatttatatttaatatgattcgcatatattaaACATGCAAA 49831 ||| | ||| ||| | ||| |||| ||| | | | | || |||||||| || Sbjct 71368 AATACGCTCATTACTTGGTT-TTTGTATTAAATGTT----GGA-ACATCAAACATGCGAA 71315 Query 49832 ATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCAT 49891 ||| ||| | ||||| || | || || | |||||| ||| || || |||||||| Sbjct 71314 GTCACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCAT 71255 Query 49892 TAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTC 49951 ||| || | || |||||||| || || || |||||||| | | ||||| ||||| || Sbjct 71254 TAAACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAAATACCTTC 71195 Query 49952 GACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAATA--TCCAA 50009 || |||||||| |||| | | | ||||| || | | || || | ||||| Sbjct 71194 AACGGCAGCAAATGCAATTACACGTTCACCAAAG-TTGGCCGA-CTTCGAAGAAATCCAA 71137 Query 50010 TTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAAT 50069 | ||||||||||| || || | | ||| || | |||||||| || ||||| Sbjct 71136 GCAAGCGCCCAATCTGCCTTACGCTTTACGGCAGGCATTGTCTCTATAGCATTGAATAAG 71077 Query 50070 TCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTCAGAA 50129 ||| ||| | ||||||| ||||||||||||| Sbjct 71076 CAATTCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCAGAA 71017 Query 50130 TGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACTGAACT 50189 || ||| ||||| || ||||||||| ||| || | ||| |||| || ||| Sbjct 71016 TGCACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACT 70957 Query 50190 TCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAAT 50249 || |||| |||||||||| ||| ||| ||||||||||||||||| ||||| || Sbjct 70956 TCCTGGCAGAAGCGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAG 70897 Query 50250 GCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTCAAGA 50309 ||||| |||| |||||||||| ||||||||| | | | ||||| || | | Sbjct 70896 GCTAACACGTGGGAAATAAAATGTCGTTCATTATCAGTGAGGCGTGCCCAATCATCCATA 70837 Query 50310 TCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCT 50351 || || || | ||||||||| |||| |||||| || |||||| Sbjct 70836 TCTTTAGAAAGATCTACTTCCTCTACTGTCCAGAACGATGCT 70795 >seq2605 Length=276952 Score = 161 bits (178), Expect = 2e-34 Identities = 175/230 (76%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 |||||||||||||| | ||||||||| || |||| |||||| |||||||| |||| Sbjct 242123 CCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCC 242064 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 ||||| || |||| |||||||| || || ||||| |||| | |||||||||||| || Sbjct 242063 AATGTGCGACCATCTTCCAATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGGGGA 242004 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTT--ATAGAATCTGACGATTCTA 192487 |||||||| |||||||| ||||| || |||| ||| |||| ||| || | || | Sbjct 242003 ATTCCTTCCTTATCTTGAATTTTGGCCTTAACAT--GTTCAATAGTATCCGAAGGCTCAA 241946 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 | || ||||| ||||| ||||| || | ||||| | || || |||||| Sbjct 241945 CCTCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAAAATTTGCATT 241896 >seq1558 Length=2163639 Score = 147 bits (162), Expect = 4e-30 Identities = 177/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| ||| |||||||| | |||||| | || ||||| | || | ||| || ||| | Sbjct 2034185 GTTCAATGATACCACCACGAAGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGT 2034126 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 | || || || || || || |||| |||||||| || || || ||||| || | ||||| Sbjct 2034125 TGTAGTCGGACAAGGTGCGACCATCTTCCAATTGCTTTCCGGCGAAGATCAAACGCTGTT 2034066 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 |||| || || || || ||||||||||| |||||| ||| ||||| || | || | Sbjct 2034065 GATCTGGGGGGATGCCCTCTTTATCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAG 2034006 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538 | | || || |||| |||||||| ||||||||||| ||||| | || |||||||||| Sbjct 2034005 AAGGCTCGACCTCTAAGGTAATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCATTT 2033946 Query 192539 T 192539 | Sbjct 2033945 T 2033945 >seq603 Length=780983 Score = 141 bits (156), Expect = 2e-28 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || ||||| | |||| ||| || ||| || ||||| Sbjct 745799 ATGCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCG 745740 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || ||| | || |||| ||||||||| ||||||||||| | |||||||| || Sbjct 745739 GACAGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGG 745680 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| ||||| || ||| ||| ||||| |||| ||| || | ||| Sbjct 745679 GGGATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCA 745620 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || ||||| ||||| || ||||| || || || | || || |||||||| Sbjct 745619 ACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 745567 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || || | |||||||| || ||||| | || | || || ||||| || || || Sbjct 747779 CCTCCGCGAAGACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGAC 747720 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || || ||| |||| || | ||| || || ||||| || || | |||||||| ||||| Sbjct 747719 AAAGTACGTCCATCCTCAAGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTGGA 747660 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || |||||||||||||| || ||| || ||||| || | |||||| | || ||| Sbjct 747659 ATGCCTTCTTTATCTTGGATCTTAGCCTTAACATTCTCAATGGTATCTGAGGGCTCGACT 747600 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | || |||||||| ||||| | || |||| || || ||||| Sbjct 747599 TCCAAGGTGATGGTTTTGCCAGTGAGGGTCTTAACGAAGATTTGCAT 747553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984438299273100